LOCUS       XM_039087644            4383 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus SUZ12 polycomb repressive complex 2
            subunit (Suz12), transcript variant X1, mRNA.
ACCESSION   XM_039087644
VERSION     XM_039087644.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 1, 2024 this sequence was replaced by
            NM_001427659.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4383
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4383
                     /gene="Suz12"
                     /note="SUZ12 polycomb repressive complex 2 subunit;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 118 ESTs, 1 long SRA read, 5 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 210 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:688041"
                     /db_xref="RGD:1593621"
     CDS             247..2463
                     /gene="Suz12"
                     /codon_start=1
                     /product="polycomb protein SUZ12 isoform X1"
                     /protein_id="XP_038943572.1"
                     /db_xref="GeneID:688041"
                     /db_xref="RGD:1593621"
                     /translation="MAPQKHGGGGGGGSGPSAGSGGGGFGGSAAAVAAAVASGGKSGG
                     GGCGGGGGYSASSSSAAAAGAAVLPVKKPKMEHVQADHELFLQAFEKPTQIYRFLRTR
                     NLIAPIFLHRTLTYMSHRNSRTNIKRKTFKVDDMLSKVEKMKGEQESHSLSAHLQLTF
                     TGFFHKNDKPSQNSENEQNSVTLEVLLVKVCHKKRKDVSCPIRQVPTGKKQVPLNPDL
                     NQTKPGNFPSLAVSSNEFEPSNSHMVKSYSLLFRVTRPGRREFNGMINGETNENIDVS
                     EELPARRKRNREDGEKTFVAQMTVFDKNRRLQLLDGEYEVAMQEMEECPISKKRATWE
                     TILDGKRLPPFETFSQGPTLQFTLRWTGETNDKSTAPVAKPLATRNSESLHQENKPGS
                     VKPAQTIAVKETLTTEMQTRKEKDTSNETRQKLRIFYQFLYNNNTRQQTEARDDLHCP
                     WCTLNCRKLYSLLKHLKLCHSRFIFNYVYHPKGARIDVSINECYDGSYAGNPQDIHRQ
                     PGFAFSRNGPVKRTPITHILVCRPKRTKASMSEFLESEDGEVEQQRTYSSGHNRLYFH
                     SDTCLPLRPQEMEVDSEDEKDPEWLREKTITQIEEFSDVNEGEKEVMKLWNLHVMKHG
                     FIADNQMNHACMLFVENYGQKIIKKNLCRNFMLHLVSMHDFNLISIMSIDKAVTKLRE
                     MQQKLEKGESAAPANEDIAEEQNGTANGFSETNSKEKALETDGVSGVPKQSKKQKL"
ORIGIN      
        1 agtgggcgga gcgagggcag ggtagggtga gcggcctccg aagcggagcg gggctcggag
       61 gagacacttt tttttcctcc ctccttccct cctctcctcc tcccttccct tcccctctcc
      121 tcccctctct cctccttccc ccctcggtcc gccggagcct gctggggcga gcggttggtg
      181 tagcaggcgc tcactctccg gggccgcccg gcgggtagct ggcgggggga ggaggcagga
      241 accgcgatgg cgcctcagaa gcacggcggt gggggagggg gcggttcggg gcccagcgcg
      301 gggtccgggg gaggcggctt cgggggttcg gcggcggcgg tggcggcggc ggtggcttcg
      361 ggcggtaaat ccggcggcgg gggctgtgga ggcggcggcg gttactcggc ctcctcctct
      421 tcggcggcgg cggctggggc cgcggtatta ccggtgaaga agccgaaaat ggagcacgtc
      481 caggctgacc acgagctttt cctccaggcc tttgagaaac caacacagat atatagattt
      541 cttcgaactc gaaatcttat agcaccaata tttttgcaca gaactcttac ttacatgtct
      601 catcgaaact ccagaacaaa catcaaaagg aaaacattta aagttgatga tatgttatca
      661 aaagtagaga aaatgaaagg agagcaagaa tctcatagct tgtctgcgca tttacaactt
      721 acatttactg gtttcttcca caaaaatgat aagccatcac aaaactcaga aaatgaacaa
      781 aattctgtta ctctggaagt cctgcttgtg aaagtttgcc acaaaaagag aaaggatgta
      841 agttgtccaa taaggcaagt tcctactggt aaaaagcagg tgcctttgaa tcctgacctc
      901 aatcaaacaa aaccaggaaa tttcccatcc ctggcagttt ccagtaatga atttgagcct
      961 agtaacagcc atatggtgaa gtcttactca ttgctgttca gagtaactcg tcctggaaga
     1021 agagagttta atggaatgat taatggagaa accaatgaaa atattgatgt cagtgaagaa
     1081 cttccagcca gaagaaaacg aaatcgtgaa gatggggaaa agacatttgt tgcacaaatg
     1141 acagtgtttg acaaaaacag gcgtttacaa cttttagatg gtgaatatga agtagccatg
     1201 caggaaatgg aagaatgtcc aataagcaag aaaagagcaa catgggagac tattcttgat
     1261 gggaagagac tgcctccatt tgaaacattt tctcagggac ctacattgca atttactctt
     1321 cgatggacag gagaaaccaa tgataagtct acagctcctg ttgccaagcc ccttgccact
     1381 agaaattcgg agagccttca tcaggaaaat aagcctggtt ctgttaagcc tgcacaaact
     1441 attgctgtta aggagacact gactacagag atgcaaacaa gaaaggaaaa ggatacttca
     1501 aatgaaactc gacagaaatt aagaatattt tatcagttcc tttataacaa taatacaaga
     1561 caacagacag aagccagaga cgacctgcac tgcccgtggt gcactctcaa ctgccggaag
     1621 ctgtacagct tactcaagca tctaaaactc tgccacagca gattcatctt caattatgta
     1681 tatcatccaa aaggtgctag gatagatgtt tctatcaatg agtgttatga tggctcctat
     1741 gcaggaaatc ctcaggacat tcatcgacaa cctggatttg cctttagtcg aaatggacca
     1801 gtaaagagaa cacctatcac acacattctt gtgtgcaggc caaagcgaac aaaagcaagc
     1861 atgtcggagt ttctggaatc tgaagatgga gaagtagagc agcagagaac atacagtagt
     1921 ggccacaatc gtctgtattt ccacagtgat acctgcttac ctcttcggcc acaagaaatg
     1981 gaagtagata gtgaagatga gaaagatccg gaatggctga gagaaaaaac cattactcaa
     2041 attgaagaat tttctgatgt gaatgaagga gagaaagaag taatgaaact gtggaatctc
     2101 catgtcatga agcatggatt tattgctgac aatcaaatga atcatgcctg tatgctgttt
     2161 gtagaaaatt atggacagaa aataattaag aagaatttat gtcgaaactt catgcttcat
     2221 ctagtcagca tgcatgactt taatcttatt agcataatgt caatagataa agctgttacc
     2281 aagctccgag aaatgcagca aaaactagaa aaaggagaat ctgcggcccc tgcaaatgaa
     2341 gacatagctg aggaacaaaa tgggacagca aatggattca gtgaaactaa ctcaaaagag
     2401 aaagctttgg aaacagacgg tgtctcaggg gttccaaaac agagcaaaaa acaaaaactc
     2461 tgagatcggg caccgtgttg tggacagaca ctgaagttgc atctagggaa ttcagcctct
     2521 agcaagagtt ttggttttag gttgtttggt ttttaatcat ggatttggaa caggcagtgt
     2581 tagatgatgt ctttgatttc agcacggagg ttctgtgggt ctgcttcgct tctcctcacg
     2641 tgcttatcag ctttagtgat gtcttcacaa tttggtttta tagcctgaat agcagttttt
     2701 caaatagtta attttttttt cttagttgta acagtcatct ttttaaatat attgggttaa
     2761 tctagaaatt tcacacctaa attttaatgc ttgtttcatt tgtgactgtt tttctgcttt
     2821 gtaattatga gacattttct gggaaaggaa ggttgggatg ttaatgctgt cttagagatg
     2881 gagaattttt gtgaaattat tacattgcca cttttcccca aactttgact gttcagaaat
     2941 catttgtgta tttgggatga gaagttaaaa tgcaagttct gcatcagttc ctgttacaag
     3001 gtttaaaaca gcaccagttc gcctcctgcc tgctgagagc gatgtgacct ttccatgcag
     3061 tcacacagtg tcatgtgcac tgatagaagt cactatttgt tttcaagtgg ctgattttag
     3121 tgatcacttc ccagtttagc ttttgacttg ggcatgtttt tagttttccc tttttgatta
     3181 ggtatcccat ggggaattgt tccgtgcaca ctttgcacta ggatgctaaa gcaagagaaa
     3241 gagttggaga ttaaaaaggc accactttgt ggtggaagtg tcctgagtgt gaaccagaag
     3301 atgtcacacc ttgtttcctt tgtgatgtcc ttcatgatta gaatatccat acagataagc
     3361 tgacttgaat tgttttgagc aactttccct gtgttgtgtt ttatgcacat attttgcggt
     3421 tgggttttct ccaacagaaa gtggtttcac tactggcata ttaatgaaca ccaataggtt
     3481 tttatccagc tccaagcact gtggttgaat aacatcacct caatttttta ttatccttta
     3541 aagatattgc attttcatat tctttattta taaaggatca atgctgctgt aaatactggt
     3601 atttttaatg ttttaatttc attccaccac catcagatgc agttccttat tttgtttagt
     3661 aaagggacat aagctttctc atggtgtctt cagagattta taaatgtaaa tactgatttg
     3721 gctggtcttt acgatgtgtt taactgtgag gctatttaaa tagtgtggat gtgacttgtc
     3781 atccagtatt aagttcttag ttactggttt ttgtgtttaa aaaaaatata agaaagaggg
     3841 aagctgcagt tttcattgta ggctccctgg ccggtaaact ctcctcatga gttcactgaa
     3901 ctctcatttg cctctgggta gtgggttcta agcatttctc ctgggcttta atttgctaaa
     3961 gctgtgcaca tatgtaaaaa aaaaatagat tattttaggg aagatgtagg tgtaggatta
     4021 ttgcttatgt catttcttaa agcagttatg ctcttaatgc ttaaaagaag gctagcattg
     4081 tttgcacaca caaaaaaaaa ttggtgattt ccctcccctg aatagtaatg aaattacttc
     4141 tgttgagtaa actttttatg tcatcttata ataaaagcta aaaatgccct ttgtttctat
     4201 ttataaaaaa aagcttttct atatgtacct ttgagaacag attttgaaga aatcatgtaa
     4261 gatgataaag catttgaatg gtacaataga tgtaaaaaaa ttcagtttaa aagaagcgtt
     4321 tgtttctaca ttaaatgttt atttgaaatg aaatgatttt gtacataaag tcattaatat
     4381 aaa
//
