LOCUS       NM_001399281            4240 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus sushi domain containing 5 (Susd5), mRNA.
ACCESSION   NM_001399281 XM_236674
VERSION     NM_001399281.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4240)
  AUTHORS   Fouillade,C., Baron-Menguy,C., Domenga-Denier,V., Thibault,C.,
            Takamiya,K., Huganir,R. and Joutel,A.
  TITLE     Transcriptome analysis for Notch3 target genes identifies Grip2 as
            a novel regulator of myogenic response in the cerebrovasculature
  JOURNAL   Arterioscler Thromb Vasc Biol 33 (1), 76-86 (2013)
   PUBMED   23117660
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000008.1.
            
            On Jan 5, 2022 this sequence version replaced XM_236674.9.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643297.30226.1,
                                           SRR26643285.33098.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760393, SAMEA5760433
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-211               JAXUCZ010000008.1  122875553-122875763
            212-389             JAXUCZ010000008.1  122878880-122879057
            390-508             JAXUCZ010000008.1  122883025-122883143
            509-697             JAXUCZ010000008.1  122894359-122894547
            698-4240            JAXUCZ010000008.1  122910785-122914327
FEATURES             Location/Qualifiers
     source          1..4240
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q32"
     gene            1..4240
                     /gene="Susd5"
                     /gene_synonym="RGD1561132"
                     /note="sushi domain containing 5"
                     /db_xref="GeneID:301039"
                     /db_xref="RGD:1561132"
     exon            1..211
                     /gene="Susd5"
                     /gene_synonym="RGD1561132"
                     /inference="alignment:Splign:2.1.0"
     CDS             112..1977
                     /gene="Susd5"
                     /gene_synonym="RGD1561132"
                     /note="sushi domain-containing protein 5"
                     /codon_start=1
                     /product="sushi domain-containing protein 5 precursor"
                     /protein_id="NP_001386210.1"
                     /db_xref="GeneID:301039"
                     /db_xref="RGD:1561132"
                     /translation="MSAGPQWPAPRSLPALCAALLLLALQPPPVRAEGKLFVLDSQNG
                     SQGLDLETARQSCKSRGAHLVSAGELKRVVQDCASAVCTTGWLADGTLGTTVCSKGSG
                     EQPVLRAIDVTIDSHPVPGAKYNALCIKDEERPCGDPPSFPHTILQGRTGLEMGDELL
                     YVCVPGSVTGHRETAFTLLCNSCGEWYGLVQACGKDEAEAHIDYEENFPDDRSVSFRE
                     LMEDSRAEGEKEKAQEDASDETPKQDRLVFTSVSKENIAQEKAFVPTTGLPGAGSSFH
                     TDWPRSRLHRKYSLWFPAETFHKSELEKDVDDETKEPLPARDTHSDEKPAPEESETRL
                     VYATTYSPSEPFADRNDSKAEDIGVSSSDDSWLDGYPVTDGAWRKVEAGQEDDEDKGD
                     GSVGPDDSVLMSPDQPIKNVTVISSESVIYSSISPSQMLDVEALVPGPINVSETERPH
                     TGDADLTNYQSTIPRRVTTQQSPMATSPSELTTSTTQETVLTTLQPTHKHSPSSNVEA
                     TQPPAEVTAPEVQDNFPYLLSEDFLGQEGPGPGASEERLLPTLAPCVGDECPSFRKGP
                     VIATIVTVLCLLFLLAVSGAVWGYRRCQHKSSVYKLNVGQRQARHYHQQIEMEKV"
     exon            212..389
                     /gene="Susd5"
                     /gene_synonym="RGD1561132"
                     /inference="alignment:Splign:2.1.0"
     exon            390..508
                     /gene="Susd5"
                     /gene_synonym="RGD1561132"
                     /inference="alignment:Splign:2.1.0"
     exon            509..697
                     /gene="Susd5"
                     /gene_synonym="RGD1561132"
                     /inference="alignment:Splign:2.1.0"
     exon            698..4240
                     /gene="Susd5"
                     /gene_synonym="RGD1561132"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gggagttccc gggtcccagc gctcccgctg tgactcccgc agcatccccg gccgcgacac
       61 cagcatcccc cggacctctc cggccgcgcg caacccgcgg acgtcaccac catgagcgcg
      121 gggccgcaat ggccggcgcc ccgcagcctg cctgcgctct gcgccgcgct gctcctgctg
      181 gctctgcagc cgcctcctgt gcgagccgag gggaagctct tcgtgctgga ctctcagaat
      241 ggctctcagg gtctggacct ggagacggct cgacagtcct gcaagagcag gggtgcccac
      301 ctggtgtctg ctggagagct gaagagggtg gttcaggact gtgcctccgc ggtgtgcacg
      361 acaggctggc tggctgatgg taccctcggg acaacggtgt gcagcaaagg gagcggtgaa
      421 cagccagtct tgagggctat agacgtgaca attgacagcc acccagttcc cggtgccaag
      481 tacaatgctc tttgtattaa ggacgaagag agaccgtgtg gagacccacc gtcattccca
      541 cacaccatcc tccagggtcg cactggcttg gagatggggg acgagctgct gtacgtgtgt
      601 gtaccagggt ccgtcacagg ccaccgggaa acggccttca ctttgctgtg caacagctgt
      661 ggggagtggt atggactggt gcaagcctgt gggaaagatg aggccgaggc ccatattgac
      721 tatgaagaaa atttccctga cgacagatcc gtgtcattca gggaactcat ggaagactcc
      781 cgggcagagg gagaaaagga aaaggctcag gaagacgcct ctgatgagac accaaaacaa
      841 gatcgtctgg tcttcacttc tgtctctaaa gaaaatatag cccaggaaaa agcctttgtg
      901 ccaaccacag gtttgccagg cgctgggagc agctttcaca cagactggcc aagatcccgc
      961 ctacaccgga agtactcact ctggtttccg gctgagactt tccacaagtc agagctggaa
     1021 aaggatgtgg acgatgagac caaagagcca cttcctgcca gagacactca cagtgatgag
     1081 aaaccggccc cagaggagtc tgaaacgagg ctggtctatg ccaccactta cagcccctca
     1141 gagccatttg cggataggaa tgacagcaag gcggaggaca taggcgtgag cagcagcgat
     1201 gattcctggt tagacggcta ccctgtgaca gacggggctt ggaggaaggt agaagctggg
     1261 caggaggatg acgaggataa gggggatggg tcagtgggac cagatgacag tgtcctcatg
     1321 tctcctgatc agcctatcaa gaatgtcacg gtcatatcaa gcgaatccgt gatatacagt
     1381 tcaatcagtc cctctcaaat gctggacgta gaagctctcg ttccgggacc catcaatgtg
     1441 tctgagactg agcgtcccca taccggggat gctgatttga ccaattatca atcaactata
     1501 ccccgaagag tcaccacaca gcagtcaccc atggccacct caccctctga actgaccacc
     1561 tccaccaccc aagaaacagt actaacaacc cttcagccaa cacataaaca cagcccctcc
     1621 agtaatgtgg aggccaccca gcctccagcg gaggtcacag ctcccgaggt tcaggataac
     1681 ttcccatacc tgctgtcaga ggacttcttg ggacaggagg gccctgggcc tggtgcaagc
     1741 gaggagaggc ttcttccaac cttggcaccg tgtgtggggg atgaatgtcc cagcttcagg
     1801 aaaggcccgg tgatcgccac gatcgtcacc gtcctgtgtc tactgtttct cctcgcagtc
     1861 tcgggagccg tgtggggcta ccgcaggtgt cagcacaaga gctctgtata caagctgaac
     1921 gttggacagc ggcaggctag acactaccac cagcagattg agatggaaaa ggtctagcct
     1981 ctgccagcag gggctctcac aaagccactt ggaggaagat taactgtgac tggtcacact
     2041 gataattctt ggggtctgag gttggaaagg cttcattctc tagagttcaa gtctttcttc
     2101 tacatgctga gaagtgtcta gggaggtgcc taaagggcag aaaggggttg gtgacgtcat
     2161 cacatatgtc aaggtctcct caaccagttg tcctggaatt cactgcccaa atcccagacc
     2221 tctgctttgg ccctattcca atacgaggtt ggggtgttgc tgtcttaaag tcaccatttg
     2281 tttcgtctgt agagaatcac aaactccatg ccctgaaata tttgaaatca ttttgataag
     2341 ctgagtgttt gagagtcatg ttaggaaaca aatgtccaat tgtggagtgg ggtggggagc
     2401 ataatggtcg ttccctttta ggtgttgcta aggacaaatg agtcaggagc cggaacatat
     2461 tttacaaact ttggagtttc tttttttctt ttcttttctt ttcttttctt tctttctttt
     2521 tgcttgtgga aaatggagag aatttaagac tgatatgtta ctttggggaa tggtgaggga
     2581 acaggcacac gcccacctct aatccagccc acagttttga gacagcccat tgttttcact
     2641 taagaacaag gtaatctctg tgccagtaag gacagcgaga ggggtccatg cctggcccgt
     2701 gcacacgaat gccacgggat tgctaccagg gctggcggca gaaacccaat tctcggtttc
     2761 ttctctcagg gttaagtgtt tctctgaagc ccagtaagaa gaaatgattt ggaagcgagg
     2821 acatgtttga agaagcccaa agactgcttt atcaaatgtg ggcactgttt gatggtggaa
     2881 gagaaaaagc aaacatgaat tccctgggct gatccatccc agccgtggct taccccagtg
     2941 accaccaagt ggtagccaac ggacggtgct tctagaaaga tggtcctccg accagggctg
     3001 caccgggaat gcgttggaga tgcagctggg ctagctctga gctgtcttca ggtagctctg
     3061 atgtgctgtg ttgatggcaa gaaccgccga cttctgtcat ctgtggtgat ctcggaaccc
     3121 aggaaggcct ggagacaggg aggtgagaac tgcctgtgcc ctgtcctgtc tcacttggcc
     3181 tcggcatctc acagcagcat ggaaagtgtc acctctggct gtctccaggg tgttgactca
     3241 gaagtaagca caccatggtt ttctttctgt attacgtcct tgaaggtgtg aaagtgacgg
     3301 aggccgtgca tttttttttc ccctgaggct ccacggccct gtctggtttt gtatggcacc
     3361 agagatcctg atccgtgttt ttgttggtgg tagtttcgca ggtgaaacgt aggtggacag
     3421 ggagtgcggc tcggtggcag agagcctgcc tggcagatgt caggtcctgg gttcaatctc
     3481 tgggtatgat gtaaacccca accctaaaac aaaaagttgg tgatggtctt ttaccaaagg
     3541 aagaaaaaag atctcatgat gtattttctg cgctgtcacc tgcttgagtc acgctttgga
     3601 aaacaacagg ttcgagagct acagaacagt atatagcaca atataaaatc ctagggacca
     3661 taactgggtc gcacgaaggc ctgaggggga ccagagagga catgtctgct tcggagggga
     3721 cagagagagg gaataagaca cttcctgtat gtagccaaag aaaaactgga cagagcaaat
     3781 ccagagtgta catttttaaa tcagattcga atctcttgtg agatagcatt tctattttta
     3841 tgatttagtg atgtaaaata accttcgtct ccacacgggg atggtgtaag taactaacct
     3901 ggaacactga atttatgcca acatgtaagt agagggtata aatacaaatg tcttaagttt
     3961 attataaatt attaacacgc gtcaatgcgc cctttcgtag acatggactg taaagtcagc
     4021 tcagcgcacc agctcataca ttttaccaat ttgctgtcat ctaaattaat atgaaaacac
     4081 aaggctgctc gtcggagggc gtgggcggcg aactcaccag gaacctaggc tgtcaccgca
     4141 gacgctttga ggacggtaat gcttacgaaa atggagaggg ggggagggtt tcactaacac
     4201 aaagcttctg acatatctaa ataaagttct tcccccccaa
//
