LOCUS       NM_001414913            3169 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus sushi domain containing 2 (Susd2), mRNA.
ACCESSION   NM_001414913 XM_006256338
VERSION     NM_001414913.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3169)
  AUTHORS   Nadjar,Y., Triller,A., Bessereau,J.L. and Dumoulin,A.
  TITLE     The Susd2 protein regulates neurite growth and excitatory synaptic
            density in hippocampal cultures
  JOURNAL   Mol Cell Neurosci 65, 82-91 (2015)
   PUBMED   25724483
  REMARK    GeneRIF: Susd2 alters axon and dendritic outgrowth, regulates
            excitatory synapse numbers.
REFERENCE   2  (bases 1 to 3169)
  AUTHORS   Pan,W., Cheng,Y., Zhang,H., Liu,B., Mo,X., Li,T., Li,L., Cheng,X.,
            Zhang,L., Ji,J., Wang,P. and Han,W.
  TITLE     CSBF/C10orf99, a novel potential cytokine, inhibits colon cancer
            cell growth through inducing G1 arrest
  JOURNAL   Sci Rep 4, 6812 (2014)
   PUBMED   25351403
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 3169)
  AUTHORS   Watson,A.P., Evans,R.L. and Egland,K.A.
  TITLE     Multiple functions of sushi domain containing 2 (SUSD2) in breast
            tumorigenesis
  JOURNAL   Mol Cancer Res 11 (1), 74-85 (2013)
   PUBMED   23131994
REFERENCE   4  (bases 1 to 3169)
  AUTHORS   Gonzales,P.A., Pisitkun,T., Hoffert,J.D., Tchapyjnikov,D.,
            Star,R.A., Kleta,R., Wang,N.S. and Knepper,M.A.
  TITLE     Large-scale proteomics and phosphoproteomics of urinary exosomes
  JOURNAL   J Am Soc Nephrol 20 (2), 363-379 (2009)
   PUBMED   19056867
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000020.1.
            
            On Dec 14, 2022 this sequence version replaced XM_006256338.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643285.55432.1,
                                           SRR26643429.57536.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760386, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-107               JAXUCZ010000020.1  13016960-13017066
            108-315             JAXUCZ010000020.1  13018253-13018460
            316-467             JAXUCZ010000020.1  13018660-13018811
            468-635             JAXUCZ010000020.1  13019342-13019509
            636-810             JAXUCZ010000020.1  13019994-13020168
            811-1012            JAXUCZ010000020.1  13020293-13020494
            1013-1098           JAXUCZ010000020.1  13020677-13020762
            1099-1367           JAXUCZ010000020.1  13020853-13021121
            1368-1526           JAXUCZ010000020.1  13021214-13021372
            1527-1685           JAXUCZ010000020.1  13021476-13021634
            1686-1934           JAXUCZ010000020.1  13022311-13022559
            1935-2207           JAXUCZ010000020.1  13022663-13022935
            2208-2384           JAXUCZ010000020.1  13023040-13023216
            2385-2490           JAXUCZ010000020.1  13023333-13023438
            2491-3169           JAXUCZ010000020.1  13023586-13024264
FEATURES             Location/Qualifiers
     source          1..3169
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /map="20p12"
     gene            1..3169
                     /gene="Susd2"
                     /note="sushi domain containing 2"
                     /db_xref="GeneID:294335"
                     /db_xref="RGD:1308595"
     exon            1..107
                     /gene="Susd2"
                     /inference="alignment:Splign:2.1.0"
     CDS             38..2515
                     /gene="Susd2"
                     /note="sushi domain-containing protein 2"
                     /codon_start=1
                     /product="sushi domain-containing protein 2 precursor"
                     /protein_id="NP_001401842.1"
                     /db_xref="GeneID:294335"
                     /db_xref="RGD:1308595"
                     /translation="MKLAVLPWILMLLSTIPGPGLTAGTPGSCSLRCGVQDEICSCHP
                     TCSGLGTCCKDFLNYCLEISPSSGSMMGGKDFVVQHLKWTDSITSVICRFKESIQTLG
                     YVDDLKQVHCISPLLYESGHIPFTISMDNGLSFPHAGTWLAAHPYKVSESEKSQLVNE
                     THWQYYGTSDTGGNLSLTWNTSALPTRTVTIELWGYEETGTPYTGNWTAKWSYLYPLA
                     TNIPNTGFFTFTPKPAPPQYQRWRVGALRIIGSKNYAGEQDVLALWTNDHALAWHLGD
                     DFRADSVAWAREQCLTWEALEDQLPNFLTELPDCPCTLAQARADSGRFFTDYGCDIEH
                     GSVCTYHPGAVHCVRSVQASPMYGSGQQCCYTASGTQLLTSDSTSGSTPDRGHDWGAP
                     PYRSPPRVPGMSHWLYDVISFYYCCLWAPECPRYMKRRPSSDCRSYRPPRLASAFGDP
                     HFVTFDGTSFSFSGNGEYVLLETLETAAAVKDLRVQGRAQPGRMPNGTQARGTGLTAV
                     AVQEDKSDVIEVRVADGSQVLEVLLNQKLLSFTEQNWMDLKGMFLSVASQDKVSIMLS
                     SGAGLEVGVQGPFLSVSILLPEKFLSHTRGLLGTLNDNPEDDFTLRNGHVLPPNATAQ
                     QLFQFGANWAISNASSLFTYDSRPLVNQFLNGPKHDPNFKPLFPDETTLSPSQAEDLA
                     RLCESDHFCVLDVISTGDPSVGNATRIAHQLHQHRLKSLQPVVSCGWLPPPVNGHKEG
                     LKYLEGSTVRFGCNSGYSLAGPESSTCRADGTWSSPTPECQPGRNYTVLLSIIFGGLA
                     IVALISIVFMLLHRRRKSNRNLWSSQP"
     exon            108..315
                     /gene="Susd2"
                     /inference="alignment:Splign:2.1.0"
     exon            316..467
                     /gene="Susd2"
                     /inference="alignment:Splign:2.1.0"
     exon            468..635
                     /gene="Susd2"
                     /inference="alignment:Splign:2.1.0"
     exon            636..810
                     /gene="Susd2"
                     /inference="alignment:Splign:2.1.0"
     exon            811..1012
                     /gene="Susd2"
                     /inference="alignment:Splign:2.1.0"
     exon            1013..1098
                     /gene="Susd2"
                     /inference="alignment:Splign:2.1.0"
     exon            1099..1367
                     /gene="Susd2"
                     /inference="alignment:Splign:2.1.0"
     exon            1368..1526
                     /gene="Susd2"
                     /inference="alignment:Splign:2.1.0"
     exon            1527..1685
                     /gene="Susd2"
                     /inference="alignment:Splign:2.1.0"
     exon            1686..1934
                     /gene="Susd2"
                     /inference="alignment:Splign:2.1.0"
     exon            1935..2207
                     /gene="Susd2"
                     /inference="alignment:Splign:2.1.0"
     exon            2208..2384
                     /gene="Susd2"
                     /inference="alignment:Splign:2.1.0"
     exon            2385..2490
                     /gene="Susd2"
                     /inference="alignment:Splign:2.1.0"
     exon            2491..3169
                     /gene="Susd2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 actgtgctgc ccgctggttg caaacgcagg gcacatcatg aagctggctg tgctgccctg
       61 gattttgatg ctgctctcga caatcccagg ccccgggctt acagcaggta ccccggggag
      121 ctgctccctg cgctgtgggg tacaggatga aatctgttcc tgtcatccaa cctgctcagg
      181 ccttggcacc tgttgtaaag actttctgaa ctactgtcta gagatttcac cctcctcggg
      241 ctccatgatg ggcggtaaag acttcgtggt gcaacattta aagtggactg attctattac
      301 cagtgtcatt tgcaggttta aggagagtat ccagaccctt ggctatgtgg acgacttgaa
      361 gcaagtgcac tgtatatcac ccttgctcta cgaaagcggc catattccct tcaccatctc
      421 aatggacaat ggcctctcct ttccccacgc aggcacttgg ctagctgctc acccctacaa
      481 agtctctgag tctgagaaga gccagctagt aaacgagacc cattggcaat actatggtac
      541 ttcagacacc gggggaaacc tcagcctcac ctggaatacc tcagcgctgc ccacgcggac
      601 cgtcaccatt gagctgtggg gctatgagga gacagggacg ccctacactg ggaactggac
      661 tgcgaagtgg tcctatctat accctttggc tacaaacatc cccaatactg gcttctttac
      721 tttcaccccc aaacctgcac cacctcagta ccagaggtgg agagtgggtg ctctgaggat
      781 cattggcagc aagaactacg caggagaaca ggatgtgctg gccctctgga ccaatgatca
      841 tgccctggct tggcatctgg gtgatgactt ccgggcagac tctgtagcct gggcccgtga
      901 acaatgcctg acctgggagg cgttagaaga ccaactaccc aacttcctga cagaactgcc
      961 agactgcccg tgcacactgg ctcaggccag ggctgactct ggccgattct tcactgacta
     1021 tggttgtgac attgaacatg gcagcgtgtg cacctaccac ccaggggctg tgcattgtgt
     1081 gcgttccgtg caagcgagcc ccatgtacgg ctcaggacag caatgctgct acacagcttc
     1141 aggtacgcag ctcctgacct cagactccac cagtggcagt acccctgacc gaggccatga
     1201 ctggggcgcg cccccatacc gctctcctcc ccgtgtgccc ggcatgtctc actggctcta
     1261 tgacgtcatc agcttctatt actgctgcct ctgggctcct gagtgtcccc ggtatatgaa
     1321 acgacggccc tccagtgact gccgcagcta cagaccccca cgcctggcct ccgccttcgg
     1381 ggacccccat tttgtcacct tcgatggcac cagcttctcg ttcagcggga acggcgagta
     1441 tgtgttgttg gagacgttgg agacggccgc cgccgtgaaa gatctgagag tgcagggacg
     1501 ggcccagcct gggagaatgc ccaatggcac ccaggcccgt ggcacagggc tgaccgcagt
     1561 ggctgtccaa gaagataagt ccgatgtgat agaggtgagg gtagctgacg gctcccaggt
     1621 cttggaagta ttgctgaatc aaaaactcct cagtttcact gaacaaaatt ggatggacct
     1681 gaagggcatg tttctgtcag tggcctctca ggataaggta tcaatcatgt tgtcatcggg
     1741 ggctggcctc gaggttggcg tacaaggtcc tttcctgagt gtgagcatcc tgcttcctga
     1801 gaagtttctg agccataccc gtggtctcct gggaacactc aacgataacc ctgaggatga
     1861 cttcaccctg cgcaatgggc atgtcctgcc cccgaatgcc actgctcagc agttattcca
     1921 gtttggagcc aactgggcta tttccaacgc ctcttccctg tttacctatg actctcggcc
     1981 tctggtcaac cagttcctga acggacccaa gcatgacccc aacttcaaac cactcttccc
     2041 cgatgagacc acactcagtc ccagccaggc agaagacttg gccagactct gtgagagcga
     2101 ccacttctgc gttcttgacg tgataagcac aggggaccca agtgtgggca atgccaccag
     2161 gattgcccac cagctgcacc agcatcgcct gaagagcctg cagccagtgg tatcctgtgg
     2221 ctggctaccc ccgcctgtga atgggcacaa ggaaggcttg aagtacctgg aaggatccac
     2281 cgtccgattc ggctgcaaca gtggctacag cttggcaggg ccagagagta gcacctgccg
     2341 cgctgatggc acatggtctt cgcctacccc ggagtgtcag ccagggcgga actacaccgt
     2401 actgctgagt atcatcttcg gaggcctggc catagtggcg ctgatctcca tcgtctttat
     2461 gttgctgcat cgtcgcagga aaagcaacag gaacttgtgg agctcgcagc cctgacacca
     2521 cagcaccctt gaccgacagc atcgggctac gtcgctcgcc aagacccagc ctcccgggag
     2581 aagcgcaaag taccctagtc ctatgaatgc cacatctaat atctgtgcct ttaacactac
     2641 ggacccaata cctgtgccta gcctgtcctt ctgactgaga ctcgatacca gatagtctta
     2701 actcctgaac cccgccccca acactcctct ctcagtaagc tgcactttat tcatctagtg
     2761 gtgatggctc taattcctct gacttgaggg atggcctcct tgtcccgtcc tagaactgga
     2821 gtacctatgt cccaagccca gaagaaagaa gttcctgcgt tggaagctca catttcaatc
     2881 gctcactccc cagagccaga taaatggaaa cctggtgcct gtcctcctgt cgggggtccc
     2941 cagagctaag ctgccttgat tccgggcccc atggcccaac ttgagagctc cggttggccc
     3001 agtcgcacag cggagaagtg gccttagggc ttgagcaggg agaaagagaa ctgtccagca
     3061 gagaagagac atccgttgta gaccaggctt ctactcttac ctcttctcta gtgtactcag
     3121 gaacaccctt ccatgcctgt accaggaaac aagctcgtgt tacaccttt
//
