LOCUS       XM_006238210            4260 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus sushi domain containing 1 (Susd1),
            transcript variant X1, mRNA.
ACCESSION   XM_006238210
VERSION     XM_006238210.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 17, 2024 this sequence was replaced by
            NM_001427255.1.
            
            On Jan 21, 2021 this sequence version replaced XM_006238210.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4260
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4260
                     /gene="Susd1"
                     /note="sushi domain containing 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 5
                     ESTs, 3 long SRA reads, 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 76 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:298031"
                     /db_xref="RGD:1306966"
     CDS             1692..3665
                     /gene="Susd1"
                     /codon_start=1
                     /product="sushi domain-containing protein 1 isoform X1"
                     /protein_id="XP_006238272.1"
                     /db_xref="GeneID:298031"
                     /db_xref="RGD:1306966"
                     /translation="MGQGPRGTRRSPGCGLQRLLWLLLLLSLARGASGEPGTDDVCAT
                     CHEHATCQQKEGKRICICNYGFWGNGRTRCVDKDECQFGATVICGNHTSCHNTPGGFY
                     CVCHTGYRATNNKKMFIPNDGTFCADVDECEDSGLCRRGGRCINTPGSFECYCMEGYV
                     AKNGSEPFHPHADATSCTEIDCGIPPEVPGAYIVGSYSSTLGGQAHYSCKEGFLSISG
                     DRVSRCTALGAWEPPELLCQEISCGSPPEVQNAILVGNHSSSQGSVAHYDCEEGFESP
                     GGKITSVCTDSGSWSEITYACAEIAMVIHDVWVFNDTCVRWQRSPERVNSKVTYLIHT
                     ERLQPDAVESVYEETINVTTDSKTPEVCLHLQQGANYTVSISAAPPRRSVPASLSFQT
                     AEDGLLEDDGIFNISVFNETCLKLNRHSRQAGSEQMYQVEALGQRWYLENFYHAVSYN
                     FTTRDQAPKLCLDLLPATDYMINITLLRPTELRSAQVTVTTSATEPPLPEVDFFTVRG
                     RLLPSFRLRKAKEINGPISSYQVLVLPLSLQSTFSCDSEGITSFFGNASPADGYVAAE
                     ILASDVPDDTLEISIGDRLYYGEYYNAPLKTVNEYCILLRITSEWNKVRRYSCAVMAE
                     VKDSSLTVQQMVGVGLGSVAFVTILAFLSFSAV"
ORIGIN      
        1 tctcacaggt ttttgtttgt ttgagacagg atctccctac tgtagttcag gctgtcctgg
       61 aacttgctgt gggtagacca aggtgcttgg aattcacctc cttctgcttc tgcctcctga
      121 ctgctgggat taaaggcatg cacctacatg tgtgggctct caggatttct ttctacccag
      181 gtaaaggtaa aggaccccag acagttccga ttgataatgc tgtcgtcggg gttactctta
      241 taaagccaca agtaacccaa ataacaacca ggacgttcat aaaagtacac tttcgaattg
      301 gatatctacc ccatgctgtg ctaaaaagac acctagtaat ttcccttccc aattacaagc
      361 tttggataat ttttttttct ggcatcacct gtgtgtgtgt gtgtgtttta aagtatacat
      421 acatatttat ttcgcagaag ggcatgggga gtggaagtta aagttgtttt aaaaatctct
      481 tgaatggtgg atttgtggaa ataatgacct gtgagagttc atggagagct ggttttacca
      541 aaagttgtcc aaacacccag agacatgttt acactcactt gatccatctc tcatttccca
      601 aagcaggctt ctctctttgt tggacaaaaa taatcttcaa gaaagctaga tacaagaaac
      661 taggaagttt atttttaacg gctttttcct aaggcagccc aagttcagcc cttatatggg
      721 tgtatttgcc tatagttgag gtagggttag tttactggtg aggaagcaag taagagtacc
      781 tgccgagtgg ggaggccccc tgcacttgga cagccccctc tcccccaaac ggatctcact
      841 tcttcagcct ccctcaaccc caatttccaa ctcctgtgtt aactctctgc ctcccagcct
      901 cccactccag tccacccaaa gcatagatct aagcgacatt cccagtttct ccttaattta
      961 atattttcct ctctccaaca gtgcactaat cttaagatac ggtgaactct gttcccgaac
     1021 actcaatttc tgcttctctc caaacctccg aggatcacgt gcctcacccc ctttccggga
     1081 ttccctcgcg tccgatgcta accctactct cagaacagtc ctatgccata tagtcattcc
     1141 tctaaccctt tatccccacc ccaaaacgtt cccacagttt ctagaataca aagtgtccct
     1201 tcatccatgt ctttcgcact tgtctctccc ttttcgattc ctaacgtgct aaggaggttg
     1261 ttatccatca agcaactgga acttttgtcg cctgttccag catgtgcacc ccgggtggat
     1321 tgtcgcacga cttatctctc tctcctctct ttctctccgt gaggagccac cacatcccag
     1381 ctctctgacc cggtcagcca gagaccctct cctgtggctc ttgcgcttct ctgctctccc
     1441 cacgggttcc acaagtcaca cttgcactgc gatgtttccc cccagcacag ttcgttttct
     1501 ccccgtggcg cggctcccga gcagccgcta caccaggcgc acccagtccg gggccccggg
     1561 acccggttgc cctcccggac ccgcgctacg aggccggaag cctctgcgcc gccccttccc
     1621 cgcgccgctg gccttatctc cgcgcacagg ggcctctggg gagtggcggg cacccagagg
     1681 aagcgggcgg catgggccag gggccccggg gcacgcgccg ctcgccaggc tgcgggttgc
     1741 agcggctgct gtggctcctg ttgctgctca gcctggcccg cggcgccagc ggagagccgg
     1801 gcacggatga cgtctgtgcc acttgccatg aacacgccac gtgccagcaa aaggaaggga
     1861 agaggatctg tatttgcaac tatgggtttt ggggcaacgg gaggacacgc tgtgttgaca
     1921 aagatgaatg ccagtttgga gccaccgtga tctgtgggaa ccacacgtcc tgccacaaca
     1981 cgcctggagg gttctactgc gtttgccaca caggctatcg ggccacaaac aacaagaaga
     2041 tgttcattcc caatgatggc actttctgtg cagacgtcga tgagtgtgaa gattctggcc
     2101 tgtgcagacg tggaggtcgg tgtatcaata ctcctgggag ctttgaatgc tactgcatgg
     2161 aagggtatgt ggcaaagaac gggtctgagc ctttccaccc acacgcggat gccacatcgt
     2221 gcacagaaat agactgtggc atccctcccg aagttcctgg ggcctacatc gtgggaagct
     2281 acagctccac actgggcggc caggcccatt acagctgcaa agaagggttt ctcagcatct
     2341 cgggagatag agtttcacga tgcacagccc tgggcgcgtg ggaacctcca gagttactct
     2401 gccaagagat cagctgtggc agtccccctg aagttcagaa cgccatcttg gtggggaatc
     2461 acagctccag ccaggggagt gtggctcact atgactgcga ggagggcttt gagagtcctg
     2521 gaggaaagat cacttctgtt tgcacagaca gcggctcctg gagtgagatc acgtatgcat
     2581 gtgcagaaat agcgatggta attcacgatg tgtgggtgtt taatgacacc tgtgtgagat
     2641 ggcaaagaag cccagagaga gtgaattcca aggtcacgta cttgatacac actgaaagac
     2701 tacagccaga tgctgtggag tccgtttatg aggagacaat caatgtgacc acagacagca
     2761 agaccccaga agtgtgcctg cacctccaac aaggagccaa ttacaccgtg agcatttccg
     2821 cagcccctcc caggcgctct gtgcccgcca gccttagctt ccagaccgct gaagatggtc
     2881 tcttagaaga tgatggaatt ttcaatattt cagtatttaa tgaaacttgt ttgaagttga
     2941 acaggcattc taggcaagct ggatcagaac aaatgtacca agtggaagct ctgggtcaga
     3001 ggtggtatct agagaacttc tatcatgctg tttcctataa cttcacgaca agagaccaag
     3061 ctcctaaact gtgtttagat ctgttgcccg ctactgatta catgataaac atcacccttc
     3121 tgagacccac cgaactgcgc tccgcacaag taacagtaac aacctcggcg acagagcccc
     3181 cccttccaga agtagacttt ttcactgtgc gtggaaggct tctaccaagc ttcaggcttc
     3241 ggaaagccaa ggagataaat ggacctatca gttcatatca ggtgttggtc ctccccctgt
     3301 ccttgcaaag cacgttttct tgtgattctg aaggcatcac ttcattcttt ggcaacgcgt
     3361 ctcctgctga tggatatgtg gctgcagaaa tactggccag tgatgttcca gatgacacat
     3421 tggagatatc cattggagac aggctgtact atggggaata ttataacgca cctttgaaga
     3481 cagtaaatga gtattgcatt ctattacgga tcacaagtga atggaacaag gtgagaagat
     3541 actcctgtgc tgtcatggct gaggtaaaag actcatcact cacagtccag cagatggtgg
     3601 gtgttggact gggctccgtg gcttttgtga ccattcttgc gttcctctcc ttctcagcag
     3661 tgtgatggct ggtggactca gcatgggaag accgagttga tgatgcacag atattctgcc
     3721 ggcttctcag gcctgtccgc cacgtggctc ccatcctaag cccttgtgtg gggtcgaaac
     3781 tttctccatc ccagcgtgac cccatccctg agttcaagat ggccatctgt gtggaatctt
     3841 aaaacttgag agctgtttat gtgtttcatg ctttctgggt cagttgtgta tccatgaact
     3901 tgagactcat gtccagtgta ataccacagg ccacagacgc catgagtcag ctcccggggt
     3961 cgttggacgt ggagcctctg tatcttcctg taattagttc ttctgctctt agttcaggat
     4021 ctgttcttct cagtgggtaa tgagtgggcg taagtctggg cagggatttg ggaaggaggt
     4081 cactggataa ggaacgctga tatgaataaa tgttttgggc gttttaggat gagcctatac
     4141 cagaaagtac aataacctgg ccacgccccc aggttccctc cctagctctg atataattcc
     4201 agttgttcgt gtgacaccag aagtgacgtc ccagaagaac ccattctgtg atctccacaa
//
