LOCUS       XM_017592100             843 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus SURF1, cytochrome c oxidase assembly
            factor (Surf1), transcript variant X5, mRNA.
ACCESSION   XM_017592100
VERSION     XM_017592100.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_017592100.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..843
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..843
                     /gene="Surf1"
                     /gene_synonym="Ab1-205"
                     /note="SURF1, cytochrome c oxidase assembly factor;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 16 ESTs, 1 long SRA read, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 118 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:64463"
                     /db_xref="RGD:620527"
     CDS             62..793
                     /gene="Surf1"
                     /gene_synonym="Ab1-205"
                     /codon_start=1
                     /product="surfeit locus protein 1 isoform X4"
                     /protein_id="XP_017447589.1"
                     /db_xref="GeneID:64463"
                     /db_xref="RGD:620527"
                     /translation="MAAVMALTVLRSRITRWPQWACAGPAPFCAVRRSVFGFSVRSGM
                     VCRPHRCCSSTAETAAAKAEDDSFLQWFLLFIPATAFGLGTWQVQRRKWKLKLIAELE
                     SRVMAEPIPLPAEVTILVNRGFVPRKKVNPETRQQGQVLGEVDLVGIVRLTENRKPFV
                     PENNPERSLWYYRDLDAMAKRTGTDPIFIDADFNSTTPGGPIGGQTRVTLRNEHMQYI
                     ITWYGLCAATSYLWFRKFVRRTPGV"
ORIGIN      
        1 acgtgaggcg gagcgcggtc ccggaaggaa gcaggtttct ccgccccgga agtgttcaaa
       61 gatggctgct gtaatggctt tgactgtcct gcgaagtcgg ataacgcgat ggccgcagtg
      121 ggcctgcgcg gggccggccc cgttctgcgc ggtcagaagg agcgtctttg ggttttctgt
      181 tcgctcaggg atggtctgta ggccacacag gtgttgcagt tctactgctg aaacagccgc
      241 cgctaaagca gaggacgact cttttctcca gtggttcctg cttttcatcc ctgctactgc
      301 ttttggtctg gggacttggc aggtccagcg ccggaaatgg aagctgaaac tgattgcaga
      361 attagagtcg cgagtcatgg ctgagcccat ccctctacct gcagaagtca ccatcctggt
      421 caatagaggg tttgttccca ggaagaaagt gaatccggag accaggcagc aaggccaggt
      481 tctgggagaa gtagacctag taggcatagt gaggctgaca gaaaacagga agccctttgt
      541 tcctgagaac aacccagaga ggagtctctg gtattaccgg gacctggacg ctatggccaa
      601 gagaacagga acggacccca tcttcattga tgcagacttc aatagcacaa cacccggagg
      661 gcccattgga ggtcaaacca gagtaaccct tcggaatgag cacatgcagt acatcattac
      721 ctggtatgga ctttgtgcag ctacatcata cttgtggttc cgaaaatttg tgcgtcggac
      781 accaggtgtg tgaaaataat gaacctgttc ctaaccacta taaaatattt tgatttataa
      841 aaa
//
