LOCUS       NM_001108010            1918 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus SPT7 like, STAGA complex subunit gamma (Supt7l),
            mRNA.
ACCESSION   NM_001108010 XM_001062292 XM_233884
VERSION     NM_001108010.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1918)
  AUTHORS   Spedale,G., Timmers,H.T. and Pijnappel,W.W.
  TITLE     ATAC-king the complexity of SAGA during evolution
  JOURNAL   Genes Dev 26 (6), 527-541 (2012)
   PUBMED   22426530
  REMARK    Review article
REFERENCE   2  (bases 1 to 1918)
  AUTHORS   Soutoglou,E., Demeny,M.A., Scheer,E., Fienga,G., Sassone-Corsi,P.
            and Tora,L.
  TITLE     The nuclear import of TAF10 is regulated by one of its three
            histone fold domain-containing interaction partners
  JOURNAL   Mol Cell Biol 25 (10), 4092-4104 (2005)
   PUBMED   15870280
REFERENCE   3  (bases 1 to 1918)
  AUTHORS   Martinez,E., Palhan,V.B., Tjernberg,A., Lymar,E.S., Gamper,A.M.,
            Kundu,T.K., Chait,B.T. and Roeder,R.G.
  TITLE     Human STAGA complex is a chromatin-acetylating transcription
            coactivator that interacts with pre-mRNA splicing and DNA
            damage-binding factors in vivo
  JOURNAL   Mol Cell Biol 21 (20), 6782-6795 (2001)
   PUBMED   11564863
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000006.1.
            
            On Nov 27, 2020 this sequence version replaced NM_001108010.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC168944.1, SRR26643293.34040.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-75                JAXUCZ010000006.1  30653928-30654002
            76-680              JAXUCZ010000006.1  30657342-30657946
            681-1005            JAXUCZ010000006.1  30659943-30660267
            1006-1243           JAXUCZ010000006.1  30661774-30662011
            1244-1918           JAXUCZ010000006.1  30663392-30664066
FEATURES             Location/Qualifiers
     source          1..1918
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q14"
     gene            1..1918
                     /gene="Supt7l"
                     /gene_synonym="RGD1562206"
                     /note="SPT7 like, STAGA complex subunit gamma"
                     /db_xref="GeneID:313905"
                     /db_xref="RGD:1562206"
     exon            1..75
                     /gene="Supt7l"
                     /gene_synonym="RGD1562206"
                     /inference="alignment:Splign:2.1.0"
     exon            76..680
                     /gene="Supt7l"
                     /gene_synonym="RGD1562206"
                     /inference="alignment:Splign:2.1.0"
     CDS             268..1506
                     /gene="Supt7l"
                     /gene_synonym="RGD1562206"
                     /note="suppressor of Ty 7-like; SPT7-like STAGA complex
                     gamma subunit"
                     /codon_start=1
                     /product="STAGA complex 65 subunit gamma"
                     /protein_id="NP_001101480.1"
                     /db_xref="GeneID:313905"
                     /db_xref="RGD:1562206"
                     /translation="MLRYWGEIPIPSGQTNRSSFDLLPREFRLVEVHDPPLHQPSANK
                     PKPPTMLDIPSEPCSLTIHTIQLIQHNRRLRSLIATAQTQSQQQSEGVKAEESEPLPS
                     CPGSPPLPDDLQPLDCKNPNAPFQIRHSDPESDFYRGKGEPVTELSWHSCRQLLYQAV
                     ATILAHAGFECANESVLETLTDVAHEYCLKFTKLLRFAVDREALLGQTPFPDVMEQVF
                     HEVGIGSVLSLQKFWQHRIKDYHTYMLQISKQLSEEYERIVNPEKATEDTKPVKIKEE
                     PVSDITFPVSEELEADLASGDQSLPIGVLGAQSERFPSNLEVEASPQASSAEVNASPL
                     WNLAHVKMEPQESEEGNVSAHGVLGSDVFEEPMSGMSEAGIPQSPEDSDSSYGSHSTD
                     SLMGSSPVFNQRCKKRMRKI"
     exon            681..1005
                     /gene="Supt7l"
                     /gene_synonym="RGD1562206"
                     /inference="alignment:Splign:2.1.0"
     exon            1006..1243
                     /gene="Supt7l"
                     /gene_synonym="RGD1562206"
                     /inference="alignment:Splign:2.1.0"
     exon            1244..1918
                     /gene="Supt7l"
                     /gene_synonym="RGD1562206"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctaggcttga cctagtcgtc gactcggacc tgtcagagtc aaggcagccg cgtagaccac
       61 tcctgagaca gggcgggaga acatcgtttg tcctagagtt ttgctagcat ctttttcaaa
      121 gtgatcttaa cttgctcttt atgtcagaac tccctggact tctgaccttt cactacagaa
      181 acttgtgatc tacagttgcc agagacgtaa acacacttta gggtatcatc tacattaaac
      241 ccagagctct tctctgcttg ctctaaaatg ctgaggtact ggggagagat cccaatacca
      301 tcaggacaga ccaacagaag ttcctttgat ctgctgcctc gggagttccg tctggtggaa
      361 gtccatgacc cacccctgca ccagccctca gccaacaagc cgaagccccc cacgatgctg
      421 gacatcccct cagagccctg cagcctcacc atccatacca tccagctgat ccagcacaac
      481 cgacgtctgc gcagccttat tgccacagct cagacccaga gtcagcagca gagcgagggt
      541 gtaaaggctg aagagagtga accgcttccc tcctgcccgg gctcacctcc tctccctgat
      601 gacctccagc ctttagattg taaaaatccc aatgcgccat ttcagatccg gcacagtgac
      661 ccagagagtg acttttaccg tgggaaagga gagccggtaa ccgagctgag ctggcactcc
      721 tgtcggcagc tcctctacca agcagtcgcc acgatcctgg cccacgcagg cttcgagtgt
      781 gctaatgaaa gtgtcctgga gaccctgact gacgtagcac atgagtactg cctcaagttc
      841 accaagctgc tgcgctttgc ggtcgatcgg gaggccctgc tgggacagac gcctttccct
      901 gatgtaatgg aacaggtgtt ccatgaagtg gggattggca gcgtgctctc cctccagaag
      961 ttctggcagc accgcatcaa ggactatcac acttacatgc tacagattag taagcagctc
     1021 tctgaagaat acgaaaggat cgtgaatccc gagaaggcca cagaagacac taagcctgtg
     1081 aagatcaagg aggagcccgt gagtgacatc acgtttcctg tcagcgagga gctggaggct
     1141 gaccttgctt ccggagacca gtccttaccc atcggggtcc tcggggctca gagcgagcgc
     1201 ttcccatcca acctggaggt ggaggcttcg ccacaggctt caagtgcaga ggtaaatgct
     1261 tctcctctct ggaacctggc tcatgtgaaa atggagcctc aagaaagtga agaaggcaat
     1321 gtgtctgcac atggcgtgct gggcagtgat gtctttgagg aaccaatgtc aggcatgagt
     1381 gaagctggaa tccctcagag ccctgaggac tcagacagca gctatggttc ccactccact
     1441 gatagcctca tggggtcatc ccctgttttc aatcagcgct gcaagaagag gatgaggaag
     1501 atttaactgc agaaggacat tttcaatcca gacctacaag agccagcaga aagccttgat
     1561 gtttaaatcg ttttcataag tagtaattag attctcaaat gaaaggcttt cctaatttca
     1621 gagaaacagt tcagaggagc atttcacttt ggcaccgctt ttgtactttt tcagaacaac
     1681 taagccactg tccacaaatg gactgtgata ctggcctggt aatcagacca aagtactgtc
     1741 cccagctggt cttactgtgg gacagcacac atcccagctc ctcccagcta tgcctctggc
     1801 acacttgaaa agaatcatgc cactttgatg ttccttgcag aggtgggatg ctgaggtact
     1861 ttgtttaaat gtcaaagctt gcatatattc acgtaaatat atgctacgat agaagtca
//
