LOCUS       XM_039084829            2564 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus SPT3 homolog, SAGA and STAGA complex
            component (Supt3h), transcript variant X5, mRNA.
ACCESSION   XM_039084829
VERSION     XM_039084829.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039084829.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2564
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2564
                     /gene="Supt3h"
                     /note="SPT3 homolog, SAGA and STAGA complex component;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 15 ESTs, 2 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 24 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:685697"
                     /db_xref="RGD:1591316"
     CDS             220..1389
                     /gene="Supt3h"
                     /codon_start=1
                     /product="transcription initiation protein SPT3 homolog
                     isoform X1"
                     /protein_id="XP_038940757.1"
                     /db_xref="GeneID:685697"
                     /db_xref="RGD:1591316"
                     /translation="MNNTAASPMSTATSSSGRNAGKTISFAAELQSMMFSLGDARRPL
                     HETAVLVEDVVHTQLINLLQQAAEVSQLRGARVISAEDLLFLMRKDKKKLRRLLKYMF
                     IRDYKSKIIKGIDEDDLLEEKLSGSSGTNKRQKIAQDLINSIDQTGELLAMFEDNELD
                     DVKQERMERAERQTRTMDSAQYAEFCESRQLSFSKKASKFRDWLDCSSMEIKPNVIAM
                     EILAYLAYETVAQLVDLALLVRQDMVSKAGDPFSHAISATFIQYHNSAEGSSCLKSSP
                     DSPENTPPPTPTAPSSGSQHAGRAASGSLGNGSTGQDSAKTKQRKRKKSTAACGVEAH
                     SDAIQPCHIREAIRRYGHKIGPLSPFTISLSLTECLPKEWDGFPGLLRGPWLCLP"
ORIGIN      
        1 actacccctg ccccgcccct catagtggca ctctcgccat cttacccccc cttctagcct
       61 agctcagtca ccttttccct ttctacaatc tttgccccca ctccctgccc ccctgcccgt
      121 cgtgtcccgg ggccgccgcc gcagacaccg cgccatctct gtcccctctc attctccacg
      181 cgggacgcgc agccgtgcct ccacgtgtct taagcagaga tgaataatac tgcagctagc
      241 ccgatgtcta ctgccacttc aagtagtgga aggaatgctg ggaagaccat cagcttcgcc
      301 gccgagctgc agagcatgat gttttcttta ggtgatgcta ggaggcctct ccatgaaaca
      361 gcagttttgg tagaagatgt ggttcacaca caactaatta acctgttaca gcaagctgca
      421 gaagtctctc agcttcgggg agcaagagtg atctctgctg aagatcttct gttcttgatg
      481 agaaaagata agaaaaaact tagaagactt ctaaagtaca tgtttatccg agactacaag
      541 tcaaagatca tcaaaggcat tgacgaggat gacctcctag aagaaaaact gagtggcagc
      601 agcggtacaa acaagagaca aaagattgct caggacttga tcaactctat tgaccagaca
      661 ggagagcttc tggcaatgtt tgaagacaac gaactcgatg atgttaaaca ggaaagaatg
      721 gagagagcag aaagacagac tcgaactatg gattcggctc agtatgcaga gttctgtgaa
      781 agccgacagt taagtttctc caaaaaagca tccaaatttc gagactggct ggactgcagc
      841 agcatggaga taaagcccaa tgttatagct atggagatcc tggcatatct ggcgtatgag
      901 acagtggccc agttggtgga tctggctctt cttgtgaggc aagatatggt atctaaggca
      961 ggggatccct tcagccatgc catttctgca accttcattc agtaccacaa ttctgctgag
     1021 gggtcctcct gtttgaagtc cagcccagac tctcctgaga acacacctcc tcctacacca
     1081 acagctccct cttctgggtc ccagcatgca ggtagagctg cgtctggctc cctggggaac
     1141 gggagcacag gacaagactc tgccaaaacc aagcagagga agaggaaaaa gagcactgcg
     1201 gcctgtggtg tcgaggctca cagcgatgcc atccagccct gccacatcag agaggcgatt
     1261 cgacgctacg gccacaagat tggccctctc tccccattca caatttcttt gtctttgaca
     1321 gagtgcctac cgaaggagtg ggacggcttt cctggcctgc tgaggggacc atggctgtgc
     1381 ctgccttgaa gagggagtgg ctcaccgagg ccattcttct ctgtcctgac tgaaaatgaa
     1441 ataagatttt accttctcct gccctcggga gtggtctgct ttgtttctga ctctcacccg
     1501 cctgactgca gctcgcccca gctcctcagc cttgtttact gaatgggccc ttgcctaatt
     1561 aatggcagga tgttggggat gctgtgtagg tggacaagaa tgcacaacac acaattttga
     1621 attttgaatt tggcatggat ttgctgccct cagctcataa atcttaaaag cggtgttgtg
     1681 cgcttttttc ctcagtgttt agtctgcatt ttatatgatg catttttatg attcagattt
     1741 gggacaaaag agacaaaact gaaatgagtc agtgtaccct tcccactgac ccaccaactg
     1801 tgctctccaa cactgttgat tgtctctgtg tgtgttttag aaacatggtt actttataaa
     1861 catacacgca tcagagattc tcctggtagg acaagccacc tgtttccctc ctctcccatc
     1921 acctcagtca ctgaagagat cgtcttcaca cacgcacgcg cgcacacaca cagcttccat
     1981 gggctttcat agcacagtta aacattgggg catgaggatc ctaatccctc cagagttctc
     2041 cccctgacgg ggactccagt ggatgtgctg cttgctggga gctgccgagc tgccctctgg
     2101 catctgtgtt ttctctagta aatgaggacg tgtaactctt gggaacaaat aaaaatacag
     2161 cagatgcaac ggtacaattc ctgttaaata tgaatcgtaa aggaggaagt tatgtcttta
     2221 attctctaag tgttctgtaa gagagagaaa cgagcagaag ttttctgtgt gaacaaaccg
     2281 ttctgagcct cagtgagcta taccctgctg tgccctgctg tcccatgctg ttcaccactg
     2341 tggtttacct gatgtgtagt aaccattttc aggaaaaagg atgtgcatgt tacagaaaaa
     2401 ttgcagatat ttaatatcaa actttgctga agggttttga tgtcccaccg gtgcctatcg
     2461 aaaagtatga ttacgctttt tctttttatc gcctctctga gtccccttgg cgtccctaat
     2521 catggaaaat tataaccctg cagtaaacat ccttgctctg gaaa
//
