LOCUS       NM_001395599            2777 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus SPT20 homolog, SAGA complex component (Supt20h),
            transcript variant 1, mRNA.
ACCESSION   NM_001395599
VERSION     NM_001395599.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2777)
  AUTHORS   Ravnskjaer,K., Hogan,M.F., Lackey,D., Tora,L., Dent,S.Y.,
            Olefsky,J. and Montminy,M.
  TITLE     Glucagon regulates gluconeogenesis through KAT2B- and WDR5-mediated
            epigenetic effects
  JOURNAL   J Clin Invest 123 (10), 4318-4328 (2013)
   PUBMED   24051374
REFERENCE   2  (bases 1 to 2777)
  AUTHORS   Spedale,G., Timmers,H.T. and Pijnappel,W.W.
  TITLE     ATAC-king the complexity of SAGA during evolution
  JOURNAL   Genes Dev 26 (6), 527-541 (2012)
   PUBMED   22426530
  REMARK    Review article
REFERENCE   3  (bases 1 to 2777)
  AUTHORS   Wang,Y.L., Faiola,F., Xu,M., Pan,S. and Martinez,E.
  TITLE     Human ATAC Is a GCN5/PCAF-containing acetylase complex with a novel
            NC2-like histone fold module that interacts with the TATA-binding
            protein
  JOURNAL   J Biol Chem 283 (49), 33808-33815 (2008)
   PUBMED   18838386
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000002.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360194.1728231.1,
                                           SRR26360181.1168768.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-74                JAXUCZ010000002.1  141047563-141047636
            75-183              JAXUCZ010000002.1  141047860-141047968
            184-270             JAXUCZ010000002.1  141049542-141049628
            271-306             JAXUCZ010000002.1  141050907-141050942
            307-365             JAXUCZ010000002.1  141051391-141051449
            366-432             JAXUCZ010000002.1  141052049-141052115
            433-559             JAXUCZ010000002.1  141054519-141054645
            560-663             JAXUCZ010000002.1  141056068-141056171
            664-780             JAXUCZ010000002.1  141059691-141059807
            781-834             JAXUCZ010000002.1  141059920-141059973
            835-974             JAXUCZ010000002.1  141061025-141061164
            975-1131            JAXUCZ010000002.1  141061807-141061963
            1132-1188           JAXUCZ010000002.1  141062052-141062108
            1189-1260           JAXUCZ010000002.1  141062883-141062954
            1261-1418           JAXUCZ010000002.1  141064330-141064487
            1419-1445           JAXUCZ010000002.1  141065386-141065412
            1446-1478           JAXUCZ010000002.1  141065945-141065977
            1479-1587           JAXUCZ010000002.1  141066893-141067001
            1588-1687           JAXUCZ010000002.1  141067345-141067444
            1688-1846           JAXUCZ010000002.1  141067727-141067885
            1847-1916           JAXUCZ010000002.1  141069771-141069840
            1917-2077           JAXUCZ010000002.1  141070416-141070576
            2078-2133           JAXUCZ010000002.1  141072800-141072855
            2134-2239           JAXUCZ010000002.1  141077964-141078069
            2240-2343           JAXUCZ010000002.1  141079449-141079552
            2344-2777           JAXUCZ010000002.1  141080223-141080656
FEATURES             Location/Qualifiers
     source          1..2777
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q26"
     gene            1..2777
                     /gene="Supt20h"
                     /gene_synonym="Fam48a; RGD1307812; Supt20"
                     /note="SPT20 homolog, SAGA complex component"
                     /db_xref="GeneID:361946"
                     /db_xref="RGD:1307812"
     exon            1..74
                     /gene="Supt20h"
                     /gene_synonym="Fam48a; RGD1307812; Supt20"
                     /inference="alignment:Splign:2.1.0"
     exon            75..183
                     /gene="Supt20h"
                     /gene_synonym="Fam48a; RGD1307812; Supt20"
                     /inference="alignment:Splign:2.1.0"
     exon            184..270
                     /gene="Supt20h"
                     /gene_synonym="Fam48a; RGD1307812; Supt20"
                     /inference="alignment:Splign:2.1.0"
     CDS             268..2481
                     /gene="Supt20h"
                     /gene_synonym="Fam48a; RGD1307812; Supt20"
                     /note="transcription factor (p38 interacting protein);
                     protein FAM48A; family with sequence similarity 48, member
                     A; suppressor of Ty 20"
                     /codon_start=1
                     /product="transcription factor SPT20 homolog"
                     /protein_id="NP_001382528.1"
                     /db_xref="GeneID:361946"
                     /db_xref="RGD:1307812"
                     /translation="MQQALEQALDRAEYIVESAQQRPPKRKCLSSGRKSIFQKLYDLY
                     VEECEKEPEVKKLRRNVNLLEKLVMQETLSCLVVNLYPGNEGYSLMLRGKNGSDSETI
                     RLPYEEGELLEYLDAEELPPILVDLLEKSQVNIFHCGCVIAEIRDYRQSSNMKSPGYQ
                     SRHILLRPTMQTLVCDVHSITSDNHKWTQEDKLLLESQLILATAEPLCLDPSVAVACT
                     ANRLLYNRQKMNTRPMKRCLKRYSRSSLNRQQDLSHCPPPPQLRLLDFLQKRKERKAG
                     QHYDLKISKAGNCVDMWKRSPCNLAVPSEVDVEKYAKVEKSIKSDDSQPTMWPAHDVK
                     DDYVFECEGGNQYQKTKLTILQSLGDPLYYGKIQPWKADEESDSQMSPSHSSADDHSN
                     WFIIGSKTDAERVVNQYQELVQNEAKCPVKMSHSSSGSASLNSGEEGEPETSSIQSSV
                     LGKGVKHRPPPIKLPSSSGNSSSGNYFTAQQASSFLKSPTPPPPSSKPSLSRKSSVDL
                     SQVSMLSPAALSPASSSQRSTVSPVMADSAGLNSISVVSSAGGAQALKSGSNSMLGCD
                     TGAIPPAGQSLCSSGLLPSGGLITNALPSAMQAAPQAGIPFGLKNTSSLRPLNLLQGP
                     EQGLAAQEPALTAQQAAVVNLTGVGGFTPSQAAVLSQLGSAENRPEQTLPQQRLQLSS
                     AFQQQQQQLQQLRFLQHQMAMAAAAAQTAQLHRHRQAGSQSKSKVKRGMPTTPKF"
     exon            271..306
                     /gene="Supt20h"
                     /gene_synonym="Fam48a; RGD1307812; Supt20"
                     /inference="alignment:Splign:2.1.0"
     exon            307..365
                     /gene="Supt20h"
                     /gene_synonym="Fam48a; RGD1307812; Supt20"
                     /inference="alignment:Splign:2.1.0"
     exon            366..432
                     /gene="Supt20h"
                     /gene_synonym="Fam48a; RGD1307812; Supt20"
                     /inference="alignment:Splign:2.1.0"
     exon            433..559
                     /gene="Supt20h"
                     /gene_synonym="Fam48a; RGD1307812; Supt20"
                     /inference="alignment:Splign:2.1.0"
     exon            560..663
                     /gene="Supt20h"
                     /gene_synonym="Fam48a; RGD1307812; Supt20"
                     /inference="alignment:Splign:2.1.0"
     exon            664..780
                     /gene="Supt20h"
                     /gene_synonym="Fam48a; RGD1307812; Supt20"
                     /inference="alignment:Splign:2.1.0"
     exon            781..834
                     /gene="Supt20h"
                     /gene_synonym="Fam48a; RGD1307812; Supt20"
                     /inference="alignment:Splign:2.1.0"
     exon            835..974
                     /gene="Supt20h"
                     /gene_synonym="Fam48a; RGD1307812; Supt20"
                     /inference="alignment:Splign:2.1.0"
     exon            975..1131
                     /gene="Supt20h"
                     /gene_synonym="Fam48a; RGD1307812; Supt20"
                     /inference="alignment:Splign:2.1.0"
     exon            1132..1188
                     /gene="Supt20h"
                     /gene_synonym="Fam48a; RGD1307812; Supt20"
                     /inference="alignment:Splign:2.1.0"
     exon            1189..1260
                     /gene="Supt20h"
                     /gene_synonym="Fam48a; RGD1307812; Supt20"
                     /inference="alignment:Splign:2.1.0"
     exon            1261..1418
                     /gene="Supt20h"
                     /gene_synonym="Fam48a; RGD1307812; Supt20"
                     /inference="alignment:Splign:2.1.0"
     exon            1419..1445
                     /gene="Supt20h"
                     /gene_synonym="Fam48a; RGD1307812; Supt20"
                     /inference="alignment:Splign:2.1.0"
     exon            1446..1478
                     /gene="Supt20h"
                     /gene_synonym="Fam48a; RGD1307812; Supt20"
                     /inference="alignment:Splign:2.1.0"
     exon            1479..1587
                     /gene="Supt20h"
                     /gene_synonym="Fam48a; RGD1307812; Supt20"
                     /inference="alignment:Splign:2.1.0"
     exon            1588..1687
                     /gene="Supt20h"
                     /gene_synonym="Fam48a; RGD1307812; Supt20"
                     /inference="alignment:Splign:2.1.0"
     exon            1688..1846
                     /gene="Supt20h"
                     /gene_synonym="Fam48a; RGD1307812; Supt20"
                     /inference="alignment:Splign:2.1.0"
     exon            1847..1916
                     /gene="Supt20h"
                     /gene_synonym="Fam48a; RGD1307812; Supt20"
                     /inference="alignment:Splign:2.1.0"
     exon            1917..2077
                     /gene="Supt20h"
                     /gene_synonym="Fam48a; RGD1307812; Supt20"
                     /inference="alignment:Splign:2.1.0"
     exon            2078..2133
                     /gene="Supt20h"
                     /gene_synonym="Fam48a; RGD1307812; Supt20"
                     /inference="alignment:Splign:2.1.0"
     exon            2134..2239
                     /gene="Supt20h"
                     /gene_synonym="Fam48a; RGD1307812; Supt20"
                     /inference="alignment:Splign:2.1.0"
     exon            2240..2343
                     /gene="Supt20h"
                     /gene_synonym="Fam48a; RGD1307812; Supt20"
                     /inference="alignment:Splign:2.1.0"
     exon            2344..2777
                     /gene="Supt20h"
                     /gene_synonym="Fam48a; RGD1307812; Supt20"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcggccggaa gtggcggttg gaggtgtggg tgggcgttac agcagccctt agttgagttc
       61 tcagactgaa ggtggtattt ctggaaactc cctgcggggt tggcagaatg cttcttcagg
      121 ccggagtcct gtgtgactat tgaataaagc cggttacttc tctgtggagt tggcgttctg
      181 agggatttaa gaagacatga tttccacccc acttccacag cacgtctaaa gttttgtctt
      241 ctttctgggt ccttatctta tgccacaatg cagcaagctc tggaacaagc tttggatcgt
      301 gcagagtata tcgtcgaaag cgctcagcag aggcctccga aaaggaaatg cctgtctagt
      361 ggaagaaagt ctatatttca aaaactttat gacttatatg ttgaagaatg tgaaaaagag
      421 cccgaggtta agaaattaag aagaaatgtg aacttgttag agaagcttgt tatgcaagag
      481 acattgtcat gtttagtggt caatctttac ccaggaaatg aagggtattc cctgatgctg
      541 aggggaaaaa acggatcaga ttctgagacc atccgattgc cttatgaaga aggggagttg
      601 cttgaatact tagatgcaga agaattacct cctattttgg ttgatctcct tgaaaaatca
      661 caggttaata tttttcactg tggatgtgtg atagcagaaa tccgtgacta caggcagtcc
      721 agtaatatga agtctcctgg ttaccaaagt aggcatattc tcttacgccc aacaatgcag
      781 actttagtct gtgatgtcca ttctataaca agtgacaacc ataaatggac ccaggaagac
      841 aaacttttgc ttgagagcca gctgattcta gctacagcag aaccactgtg tcttgaccca
      901 tctgtggcag tagcatgcac ggccaatagg ctgctctata accggcagaa gatgaacact
      961 cgcccaatga aacggtgttt gaagaggtac tccaggtcct ccctgaaccg gcagcaggac
     1021 ctctctcact gtcctcctcc ccctcagctg agattacttg atttcttaca aaagaggaag
     1081 gaaaggaaag caggtcagca ttatgacctc aaaatttcca aagcaggaaa ttgtgtagac
     1141 atgtggaaac ggagcccctg taacttggct gtgccttctg aagtagatgt ggagaaatat
     1201 gctaaagtgg agaaatcgat taaatctgat gactcacagc caaccatgtg gccagctcat
     1261 gatgtaaaag acgattatgt atttgaatgt gaaggtggta atcagtatca gaaaacaaag
     1321 ctgaccatct tgcagtctct tggtgatcca ctttactacg gtaaaataca gccgtggaaa
     1381 gcagatgaag aaagtgacag ccagatgtct ccatcccact cctctgctga tgatcattca
     1441 aactggttta ttattgggtc aaagactgac gcagagaggg tggttaatca ataccaggag
     1501 ttggtccaga atgaagccaa atgcccagtg aagatgtctc acagctctag tggttccgcc
     1561 agtctcaatt ctggagagga gggagaaccg gagacttcct ccattcagtc ttcagttttg
     1621 ggaaagggag taaaacatcg acccccaccc atcaaacttc cctcaagctc aggaaatagt
     1681 tcctcaggta actatttcac agcacagcag gccagcagct tccttaaatc tccaactcct
     1741 ccaccgccat catcgaagcc cagcctttct cggaagtcat ctgtggatct cagtcaagtt
     1801 agcatgcttt ctcctgctgc cctgtcacct gccagctcat cccagagaag cacggtctcc
     1861 ccggtcatgg cagactctgc tgggcttaac tccatcagtg tagtgagctc tgctggtgga
     1921 gcccaggctc tgaagagtgg ctcaaactcc atgctgggct gtgacactgg ggccatacct
     1981 cctgcaggac aaagcctgtg cagcagcggc cttctgccat caggaggtct cataacaaat
     2041 gcactgccca gtgccatgca ggcagctcct caagcaggta tcccatttgg tttaaaaaat
     2101 acttcaagtc tcaggccttt aaatctactc cagggtcctg aacaagggct agctgctcaa
     2161 gaaccagcct taactgcgca gcaagctgct gttgttaatc ttactggagt aggaggcttt
     2221 acgccgtcac aggcagctgt gttgtctcag cttggctctg ccgagaacag accagagcaa
     2281 acccttcctc agcagagact ccagctctcc tctgcctttc agcagcagca gcagcagcta
     2341 caacagttgc gattcttgca gcatcaaatg gctatggcag cagccgccgc acaaacagcc
     2401 cagctccatc gtcaccggca ggcaggcagc cagtcaaaga gtaaagtgaa gagaggcatg
     2461 ccaaccactc caaaattctg agcaattgtt ttctcttttt tataaaacaa gaccactgaa
     2521 tgaaaagaat tgtatttcta cttcatttcc cccaagatgt cagtatttta cattgatata
     2581 tgtgcacact ttatatagaa gcaaaaccct gtgattctta catggaaaca tggttcaatg
     2641 ttttcctgta cataccaatt acagaaataa cgtaagaagt actagacata tctttcaaag
     2701 aatgtaatta ggtatttatt tagtataaaa ggcctgtgca cagtgtaaca aatacaattt
     2761 ttacagctgt tttacaa
//
