LOCUS       NM_001415685            1251 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus Sad1 and UNC84 domain containing 5 (Sun5), mRNA.
ACCESSION   NM_001415685 XM_008762312
VERSION     NM_001415685.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1251)
  AUTHORS   Shang,Y., Yan,J., Tang,W., Liu,C., Xiao,S., Guo,Y., Yuan,L.,
            Chen,L., Jiang,H., Guo,X., Qiao,J. and Li,W.
  TITLE     Mechanistic insights into acephalic spermatozoa syndrome-associated
            mutations in the human SUN5 gene
  JOURNAL   J Biol Chem 293 (7), 2395-2407 (2018)
   PUBMED   29298896
REFERENCE   2  (bases 1 to 1251)
  AUTHORS   Shang,Y., Zhu,F., Wang,L., Ouyang,Y.C., Dong,M.Z., Liu,C., Zhao,H.,
            Cui,X., Ma,D., Zhang,Z., Yang,X., Guo,Y., Liu,F., Yuan,L., Gao,F.,
            Guo,X., Sun,Q.Y., Cao,Y. and Li,W.
  TITLE     Essential role for SUN5 in anchoring sperm head to the tail
  JOURNAL   Elife 6, e28199 (2017)
   PUBMED   28945193
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1251)
  AUTHORS   Zhu,F., Wang,F., Yang,X., Zhang,J., Wu,H., Zhang,Z., Zhang,Z.,
            He,X., Zhou,P., Wei,Z., Gecz,J. and Cao,Y.
  TITLE     Biallelic SUN5 Mutations Cause Autosomal-Recessive Acephalic
            Spermatozoa Syndrome
  JOURNAL   Am J Hum Genet 99 (4), 942-949 (2016)
   PUBMED   27640305
  REMARK    Erratum:[Am J Hum Genet. 2016 Dec 1;99(6):1405. PMID: 27912045]
REFERENCE   4  (bases 1 to 1251)
  AUTHORS   Xing,X.W., Li,L.Y., Fu,J.J., Zhu,W.B., Liu,G., Liu,S.F. and Lu,G.X.
  TITLE     [Cloning of cDNA of TSARG4, a human spermatogenesis related gene]
  JOURNAL   Sheng Wu Hua Xue Yu Sheng Wu Wu Li Xue Bao (Shanghai) 35 (3),
            283-288 (2003)
   PUBMED   12621555
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On Dec 22, 2022 this sequence version replaced XM_008762312.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360181.675460.1,
                                           SRR26643293.19772.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760389 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-179               JAXUCZ010000003.1  162815343-162815521 c
            180-235             JAXUCZ010000003.1  162813838-162813893 c
            236-310             JAXUCZ010000003.1  162813615-162813689 c
            311-377             JAXUCZ010000003.1  162812759-162812825 c
            378-439             JAXUCZ010000003.1  162812077-162812138 c
            440-489             JAXUCZ010000003.1  162811471-162811520 c
            490-524             JAXUCZ010000003.1  162810372-162810406 c
            525-633             JAXUCZ010000003.1  162809700-162809808 c
            634-712             JAXUCZ010000003.1  162799258-162799336 c
            713-828             JAXUCZ010000003.1  162798422-162798537 c
            829-996             JAXUCZ010000003.1  162796943-162797110 c
            997-1083            JAXUCZ010000003.1  162796413-162796499 c
            1084-1251           JAXUCZ010000003.1  162795096-162795263 c
FEATURES             Location/Qualifiers
     source          1..1251
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q41"
     gene            1..1251
                     /gene="Sun5"
                     /gene_synonym="Spag4l"
                     /note="Sad1 and UNC84 domain containing 5"
                     /db_xref="GeneID:296289"
                     /db_xref="RGD:1306357"
     exon            1..179
                     /gene="Sun5"
                     /gene_synonym="Spag4l"
                     /inference="alignment:Splign:2.1.0"
     CDS             106..1215
                     /gene="Sun5"
                     /gene_synonym="Spag4l"
                     /codon_start=1
                     /product="SUN domain-containing protein 5"
                     /protein_id="NP_001402614.1"
                     /db_xref="GeneID:296289"
                     /db_xref="RGD:1306357"
                     /translation="MPRTRNTGDLCPISEDTTHSGRSRRSAQRSYINRMAEATPANMN
                     DPLLLPLRINPPGLSLAQFILGYMSWLTYLACFLRTQAQQVLLNTCRFKLLFQKLIEK
                     MGLLVLCVFGFWMFSMHLPSKMEVWQDDSISGPLQSLRMYQEKVRHHTGEIQDLRGSM
                     NLLIAKLQQMEAMSDEQKMTQKIMKMIQGDFIEKPDFALKSIGASIDFEHTSPTYNHD
                     KARSYWNWIRLWNYAQPPDVILEPSVTPGNCWAFAGDRGQVTIRLAQKVYLSNVTLQH
                     IPKTISLSGCLDTAPKDFVIYGMEHPPREEVFLGAFQFQPENIIQTFQLQNQPPRGFA
                     AVKVKISSNWGNPRFTCLYRVRVHGCATPPKRSYL"
     exon            180..235
                     /gene="Sun5"
                     /gene_synonym="Spag4l"
                     /inference="alignment:Splign:2.1.0"
     exon            236..310
                     /gene="Sun5"
                     /gene_synonym="Spag4l"
                     /inference="alignment:Splign:2.1.0"
     exon            311..377
                     /gene="Sun5"
                     /gene_synonym="Spag4l"
                     /inference="alignment:Splign:2.1.0"
     exon            378..439
                     /gene="Sun5"
                     /gene_synonym="Spag4l"
                     /inference="alignment:Splign:2.1.0"
     exon            440..489
                     /gene="Sun5"
                     /gene_synonym="Spag4l"
                     /inference="alignment:Splign:2.1.0"
     exon            490..524
                     /gene="Sun5"
                     /gene_synonym="Spag4l"
                     /inference="alignment:Splign:2.1.0"
     exon            525..633
                     /gene="Sun5"
                     /gene_synonym="Spag4l"
                     /inference="alignment:Splign:2.1.0"
     exon            634..712
                     /gene="Sun5"
                     /gene_synonym="Spag4l"
                     /inference="alignment:Splign:2.1.0"
     exon            713..828
                     /gene="Sun5"
                     /gene_synonym="Spag4l"
                     /inference="alignment:Splign:2.1.0"
     exon            829..996
                     /gene="Sun5"
                     /gene_synonym="Spag4l"
                     /inference="alignment:Splign:2.1.0"
     exon            997..1083
                     /gene="Sun5"
                     /gene_synonym="Spag4l"
                     /inference="alignment:Splign:2.1.0"
     exon            1084..1251
                     /gene="Sun5"
                     /gene_synonym="Spag4l"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 attccaggga atactcaatg gtggtggtgg cagtggctgc cacttcctcc tcattgagtt
       61 ccatagacat ccatcctcat cctcagccct taagagagaa aatcaatgcc ccggacaagg
      121 aacaccgggg acttgtgtcc catatctgaa gacacaactc acagtggcag gtctaggagg
      181 agtgcccaaa gaagctatat caacagaatg gcagaggcga ccccagcaaa catgaatgac
      241 cctctcctgt tgcctcttcg catcaacccc ccaggcctca gcctcgccca gttcatactg
      301 ggatatatgt cctggctcac ctacctcgcc tgcttcctga ggactcaggc ccagcaagtt
      361 ctacttaaca cctgcaggtt caagttgctc ttccagaaac tcattgaaaa gatgggcctt
      421 ctggtcctct gtgtttttgg cttctggatg ttttccatgc atttaccatc aaaaatggaa
      481 gtctggcagg atgacagcat aagtggtcca ctgcagagcc tgaggatgta ccaggaaaag
      541 gtacgacatc acactgggga aatccaggac ctacgaggta gcatgaacct gctcattgcc
      601 aaactccaac agatggaagc catgtctgat gagcaaaaaa tgacccagaa aataatgaag
      661 atgattcaag gcgatttcat tgaaaagcca gactttgcct tgaagtccat aggggccagc
      721 atcgacttcg agcacacgtc acccacgtat aaccacgaca aggctcgctc ctactggaac
      781 tggatccgac tgtggaacta cgcgcagccc ccggatgtga tccttgagcc cagtgttaca
      841 cctgggaact gctgggcctt tgccggtgac cgtggccagg tgaccatccg tttggcccag
      901 aaagtctatc tgtccaacgt tacactgcag cacattccca agaccatctc attgtcggga
      961 tgcctggaca ctgcaccaaa ggactttgtc atctacggca tggagcaccc gcccagggag
     1021 gaagtgttcc tgggggcatt ccagtttcag ccagaaaaca tcatccagac atttcagctc
     1081 cagaaccagc cacccagggg ctttgcggca gtcaaggtga agatctccag caactggggg
     1141 aaccctcgct tcacctgcct gtaccgagtg cgtgtgcatg gctgtgcaac ccctcccaaa
     1201 cgctcatacc tataacccct gtcctagagt aaagtatata gtttggtcca a
//
