LOCUS       XM_006248943            4169 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus Sad1 and UNC84 domain containing 1
            (Sun1), transcript variant X4, mRNA.
ACCESSION   XM_006248943
VERSION     XM_006248943.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006248943.4.
            
            On Jan 21, 2021 this sequence version replaced XM_006248943.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4169
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4169
                     /gene="Sun1"
                     /gene_synonym="Unc84a"
                     /note="Sad1 and UNC84 domain containing 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 32 ESTs, 5 long SRA reads, 34 Proteins, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 191 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:360773"
                     /db_xref="RGD:1359142"
     CDS             153..2900
                     /gene="Sun1"
                     /gene_synonym="Unc84a"
                     /codon_start=1
                     /product="SUN domain-containing protein 1 isoform X4"
                     /protein_id="XP_006249005.1"
                     /db_xref="GeneID:360773"
                     /db_xref="RGD:1359142"
                     /translation="MDFSRLHTYTPPQCVPENTGYTYALSSSYSSDALDFETEHRLEP
                     VFDSPRMSRRSLRLITTTAAYSSGDGQTVDTHISTSRATPAKGRETRTVKQRSASKPA
                     FSINHLSGKGLSSSTSHDSSCSLRSATVLRHPVLDESLIREQTKVDHFWGLDDDGDLK
                     GGNKAATQGNGELAAEVASSNGYTCRDCRMLSARTDALTAHSAVHGPTSRVYSRDRTL
                     RPRGASFYLDRTLWLAKYTSSSFASFIVQLFQVVLMKLNFESETYKLKGYESRAYESQ
                     SYETKSHESEAHLGHCGRMTAGELSRVDGESLCDDCKGKKHLETHTTTHSQLSQPHRA
                     AGAMGRLCTYTGDLLVRALRRTRAAGWSVAEAMWSVLWLAVTAPGKAASGTFWWLGSG
                     WYQFVTLISWLNVFLLTRCLRNICKVFVLLLPLLLLLGAGFSLWGQGNFFSLLPMLNW
                     TAMQPAQRVDNPKDMHRPGPLSPSPPLKVDPMASQWPQESDMGQKIASLSAQCHNHDE
                     RLAELTVLLQKLQIRVDQVDDGREGLSLWVKDMVGQHLQEIGSIEPPDAKTDFLTLHH
                     DHEVRLSSLEDVLRKLTEKSEAIQKELEETKLRAGSRDEEQPLLDRVQHLELELNLLK
                     SQLSDWQHLRSSCEQADARIQETVQLMFSEDQPGGSLEWLLQKLSSRFVSKDELQVLL
                     HDLELKLLQNITHHITVTGQAPTSEAIVSAMSQAGISGITEAQAHIIVNNALRLYSQD
                     KTGMVDFALESGGGSILSTRCSETYETKTALLSLFGVPLWYFSQSPRVVIQPDIYPGN
                     CWAFKGSQGYLVVRLSMKIYPTTFTMEHIPKTLSPTGNISSAPRDFAVYGLETEYQEE
                     GQPLGRFTYDQEGDSLQMFHTLERPDQGFQIVELRVLSNWGHPEYTCLYRFRVHGEPI
                     Q"
ORIGIN      
        1 aggcggcggc gcgaggcagg agcccgggtt ccttgcatag ttctgactgt ctcgctgacc
       61 tcacagagat cttgcctctg cttcctgagt gctggggtaa aagggtgtgt gcaactaagt
      121 tggcagcttg agcatggtct gagccggtga acatggactt ttctcggctg cacacataca
      181 ccccacccca gtgtgtgcca gagaacactg gctataccta cgcactcagt tctagttatt
      241 cttcggatgc tctggatttt gagactgaac acagattgga acctgtcttt gactctccaa
      301 ggatgtcccg ccgtagcttg cgcctgatca caacaacagc tgcatacagc agtggggacg
      361 gccagactgt tgacactcac atcagcacca gcagggccac cccggccaag gggagagaaa
      421 ccaggacagt caaacagaga agtgcaagca agccagcttt tagtatcaac cacctgtcag
      481 ggaagggctt gtcctcaagc acaagccatg acagctcttg cagcctgcgg agtgccacgg
      541 tgctgcggca tcctgtgcta gacgagtctc tgattcgtga gcagaccaaa gtggaccact
      601 tctggggtct cgatgatgat ggcgacctta aaggtggaaa taaagctgcc actcagggaa
      661 atggtgaact ggcagcagag gtggcgagca gcaacggata cacctgccgc gactgcagga
      721 tgctctcggc tcggacagac gctctcacag cccactctgc cgtccacggg cccacctcaa
      781 gggtttactc cagagatagg actctcagac cccgcggtgc gtccttttac ctggatagga
      841 ctctgtggct ggccaagtac acctcctcct cctttgcgtc attcatagtt caactttttc
      901 aagtggtttt aatgaagctc aattttgaat cagaaactta caaattgaaa ggctatgaat
      961 ccagagctta tgaatcacag agctatgaga caaagagcca tgagtcagaa gcccatctcg
     1021 gtcactgtgg gaggatgact gccggagaac tttccagagt ggacggggag tccctgtgtg
     1081 atgactgtaa ggggaagaag caccttgaga cacacacaac cacccactcg caactgtccc
     1141 agccacacag ggcggcaggg gccatggggc gcctctgcac ctacacaggt gacctcttgg
     1201 ttcgagcact gcgcaggacc agagctgctg ggtggtctgt ggcagaggcc atgtggtcgg
     1261 tgctctggct ggctgtcact gctccaggga aggcagcctc tggaaccttc tggtggctag
     1321 ggagtggctg gtaccaattt gttactttga tttcctggct gaatgtgttt cttcttacca
     1381 ggtgccttcg aaatatttgc aaggtttttg tcttgctgct cccactccta cttttattag
     1441 gtgctggttt ctccttgtgg ggccagggca acttcttctc actcctacca atgttgaatt
     1501 ggacggccat gcagccagcg cagagggtgg acaatcccaa ggacatgcac agacccggcc
     1561 ctctttcccc gagtccacct ctcaaggttg atcccatggc ttcccagtgg cctcaggaga
     1621 gtgatatggg gcagaagata gcctctttga gtgcacagtg ccacaaccat gatgagagac
     1681 tcgcagagct gacagtcctg cttcagaaac tccagatacg ggtagaccaa gtggatgacg
     1741 gcagggaagg gctgtcactg tgggtcaagg atatggttgg acagcacctg caggagattg
     1801 gctccataga accacctgat gctaagactg acttcctgac tttacaccat gaccatgaag
     1861 tgcgtctctc cagtttggaa gatgttctta gaaaactgac tgaaaaatct gaggctatcc
     1921 agaaggagct ggaggaaacc aagctgagag caggcagcag ggatgaagag cagcccctcc
     1981 ttgaccgtgt gcagcaccta gaactggagc tgaacctgct gaagtcacag ctgtcggact
     2041 ggcagcatct gaggagcagc tgtgagcagg ctgatgcccg catccaggag actgtgcagc
     2101 tcatgttctc tgaggaccag ccgggcggct ccctcgagtg gctgttacag aagctttctt
     2161 ctcggttcgt gagcaaggat gagctgcagg tgcttttgca tgaccttgag ctgaaactac
     2221 tgcagaatat cacacaccac atcaccgtca caggccaggc tccgacatcc gaggccattg
     2281 tgtctgccat gagtcaggca gggatttcag gaatcacaga agcgcaagca catatcattg
     2341 tgaacaatgc tctgaggctg tactcccaag acaagactgg gatggtggac tttgctctgg
     2401 agtctggagg tggcagcatc ctaagcactc ggtgctctga gacctatgag accaagacgg
     2461 cactgctgag cctgttcggg gtcccactgt ggtacttctc acagtcacct cgagtggtaa
     2521 tccagcccga catctacccg gggaattgct gggcatttaa gggttcccag gggtacctgg
     2581 tagttcgctt gtccatgaag atctacccaa ccacgttcac catggagcac attccaaaga
     2641 cgctgtcacc gactggtaac atctccagtg cccccagaga ctttgcagtc tatggactgg
     2701 aaaccgagta tcaggaagag gggcagcctc tgggacggtt cacctatgac caggaagggg
     2761 actcactcca gatgttccac acactggaaa gacctgacca agggttccag atagtagagc
     2821 tccgggttct gtccaactgg ggccaccctg agtacacttg cctctaccgg ttccgagtcc
     2881 acggagagcc catccagtag agcactccag ccatgtacat gtctgtatat accaagacgc
     2941 cataacactg gaactcattg agcaagagag cacataagca taggacctgt cagtcaccct
     3001 tcaataaatg tatgatagcc atgaggacat gttgagtcct ctgaggctgt gtgtgcgtgc
     3061 tcagagcccc aaagcctggg aagctttttg aattcatttg aatgtatggt tctcggacac
     3121 tcctttgatt tggggatttg cttcaatgca taaagtcaag cagatgggct ggcaggtttc
     3181 caggctcttg acatagaggc tgagagctct gccttggcca tcctctggat gtcaggaagg
     3241 caaaagttcc atttgctaaa cccacatgtt tctttcaggg aaaaggtctg ttcagtctga
     3301 ccccttccag atttcctggt ggggagaggc tgggtatgtc gtggattgtc tgctttaagc
     3361 tggggctccc atgattcccc aggggagtgg attgggcttt ccaaaagggc agtggggtac
     3421 acacaccatg aatggtgctc ttcgggtctc agccaggcca ttccattcca ggcagatcac
     3481 agaatggaca ggaacctttt gagatgtgac ctctggtgtc ctccagctct gttaggccct
     3541 gccgaggggg aacaacacta aggtggtgct agtggctatc cctcttggtc tttaccactg
     3601 cagcactttg tgctgccctt gggtttgcct ctgcaccatc atcagccctt ctcaacgact
     3661 caaatttggt tataattaat atttaatatt tagacttttg tgagcagact ttataacata
     3721 catcatctgg acacttgaag tgtttagatg ttttacctaa acaactgtta agttttattg
     3781 gttagacagc ctggcagaat acaagctcac cttctggggc tcagagttct gggatttcgt
     3841 gcatgttgca agcagtcctt aagacagtgg cccaaaatac atcccactcc atagggttag
     3901 agcctctgcc tgtgtggcca ggttgtgcga tgtgcacaca ctttgcatac tccgggttac
     3961 atgcagaagt cagaatttcc tatattaaac taaattgggg aattgggggt ggagatattt
     4021 tgaatattta tttttaaaaa tgcaagatag gactttgtgc aatgtatttt tgtaaatgct
     4081 tttcaaaaca cttgtctttg gtagtgcttc tactgcctcc aaattaagat gctattgaga
     4141 tgtttaaata aaagagttaa tttttaaaa
//
