LOCUS       NM_001011920            2102 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Rattus norvegicus SURP and G patch domain containing 1 (Sugp1),
            mRNA.
ACCESSION   NM_001011920 XM_003751571 XM_214320
VERSION     NM_001011920.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2102)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC079341.1.
            
            On or before Dec 15, 2013 this sequence version replaced
            XM_003751571.2, XM_214320.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC079341.1, SRR8487227.264204.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760434 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2102
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /map="16p14"
     gene            1..2102
                     /gene="Sugp1"
                     /gene_synonym="Sf4"
                     /note="SURP and G patch domain containing 1"
                     /db_xref="GeneID:290666"
                     /db_xref="RGD:1310496"
     exon            1..44
                     /gene="Sugp1"
                     /gene_synonym="Sf4"
                     /inference="alignment:Splign:2.1.0"
     CDS             11..1945
                     /gene="Sugp1"
                     /gene_synonym="Sf4"
                     /note="splicing factor 4"
                     /codon_start=1
                     /product="SURP and G-patch domain-containing protein 1"
                     /protein_id="NP_001011920.1"
                     /db_xref="GeneID:290666"
                     /db_xref="RGD:1310496"
                     /translation="MSLKMDNRDVAGKANRWFGMAQPKSGKMNMNILHQEELIAQKKR
                     EIEARMEQKARQSHVASPQPPHPGEVADAQNSCISNKFANDGSFLQQFLKLQKAQAST
                     DSAPRAPPSSPAPSSLKRPLLLSKRTGLGLGSPMGPVKNYSHAKQLPVAHRPSVFQSP
                     DDDDEEEDYEQWLEIKVSPPEGAETRRVIEKLARFVAEGGPELEKVAMEDYKDNPAFT
                     FLHDKNSREFLYYRKKVAEIRKEAQKPQAATQKVSPPEDEEAKNLAEKLARFIADGGP
                     EVETIALQNNRENQAFSFLYDPNSQGYRYYKQKLEEFRKAKAGSTGSLPAPVPNPSLR
                     RKSAPEALSGAVPPITACPTPVAPAPAVNPTPSIPGKPTATATVKRKRKSRWGPEEDK
                     VELPPAELAQKDTDASPSPLSVQDLKGLGYEKGKPVGLVGVTELSDAQKKQLKEQQEM
                     QQMYDMIMQHKRAMQDMQLLWEKALQQHQHGYDSDEEVDSELGTWEHQLRRMEMDKTR
                     EWAEQLTQMGRGKHFIGDFLPPDELEKFMETFKALKEGREPDYSEYKEFKLTVENIGY
                     QMLMKMGWKEGEGLGTEGQGIKNPVNKGATTIDGAGFGIDRPAELSKEDDEYEAFRKR
                     MMLAYRFRPNPLNNPRRPYY"
     exon            45..216
                     /gene="Sugp1"
                     /gene_synonym="Sf4"
                     /inference="alignment:Splign:2.1.0"
     exon            217..317
                     /gene="Sugp1"
                     /gene_synonym="Sf4"
                     /inference="alignment:Splign:2.1.0"
     exon            318..539
                     /gene="Sugp1"
                     /gene_synonym="Sf4"
                     /inference="alignment:Splign:2.1.0"
     exon            540..663
                     /gene="Sugp1"
                     /gene_synonym="Sf4"
                     /inference="alignment:Splign:2.1.0"
     exon            664..764
                     /gene="Sugp1"
                     /gene_synonym="Sf4"
                     /inference="alignment:Splign:2.1.0"
     exon            765..888
                     /gene="Sugp1"
                     /gene_synonym="Sf4"
                     /inference="alignment:Splign:2.1.0"
     exon            889..1250
                     /gene="Sugp1"
                     /gene_synonym="Sf4"
                     /inference="alignment:Splign:2.1.0"
     exon            1251..1357
                     /gene="Sugp1"
                     /gene_synonym="Sf4"
                     /inference="alignment:Splign:2.1.0"
     exon            1358..1535
                     /gene="Sugp1"
                     /gene_synonym="Sf4"
                     /inference="alignment:Splign:2.1.0"
     exon            1536..1642
                     /gene="Sugp1"
                     /gene_synonym="Sf4"
                     /inference="alignment:Splign:2.1.0"
     exon            1643..1788
                     /gene="Sugp1"
                     /gene_synonym="Sf4"
                     /inference="alignment:Splign:2.1.0"
     exon            1789..1918
                     /gene="Sugp1"
                     /gene_synonym="Sf4"
                     /inference="alignment:Splign:2.1.0"
     exon            1919..2077
                     /gene="Sugp1"
                     /gene_synonym="Sf4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtgggattgg atgagtctca agatggacaa ccgggatgtt gcaggaaagg ccaatcggtg
       61 gttcgggatg gcacaaccca agtctggaaa gatgaatatg aacatcctcc accaggaaga
      121 gctcattgct cagaagaagc gggagattga ggccagaatg gaacaaaagg ccagacagag
      181 tcatgtggcg agtccacagc cccctcatcc tggggaagtt gccgatgcac aaaactcctg
      241 catctccaac aagtttgcca acgacggcag cttcttgcag cagtttctga agttacagaa
      301 ggcacaggca agcacagatt cagcccccag ggcccccccc agctcgccag cacccagctc
      361 cttgaagaga cccctcctgc tcagcaagcg aacgggcctg gggctgggta gcccaatggg
      421 ccctgtgaag aactactcac atgccaaaca gctacctgtc gcacaccgcc caagtgtctt
      481 ccagtcccct gatgatgatg acgaggagga ggactatgag cagtggctgg aaatcaaagt
      541 ttcaccccca gagggagccg agactcggag agtgatagag aagctagccc gttttgtggc
      601 agaaggaggc cccgagctag agaaagtagc tatggaggac tacaaggata acccagcctt
      661 cacgttttta catgataaga atagcaggga attcctatac tacagaaaga aggtagccga
      721 gatcaggaaa gaagcccaaa agccacaggc agccacccag aaagtttcac ccccagagga
      781 cgaagaggcc aagaaccttg cagaaaagtt ggccaggttc atagcagacg ggggtcctga
      841 agtggagacc atcgccctcc agaacaaccg tgagaatcag gccttcagtt ttctctatga
      901 tcccaacagc caagggtaca ggtactacaa gcaaaagctg gaggagttcc ggaaagccaa
      961 ggcgggctcc acaggctccc ttcctgctcc tgttcccaac cccagcctgc ggcgaaagtc
     1021 tgccccagaa gccctgtcag gggctgtgcc ccccatcact gcctgcccta ctccagtggc
     1081 cccagcacct gctgtcaacc ccactccatc catccccggg aagcccaccg ccacagccac
     1141 tgtaaagagg aagcggaaga gccggtgggg gcctgaggag gacaaagtgg agctgccacc
     1201 tgcagaactg gcacagaagg acacagatgc ctcaccttca cctctttcag ttcaagatct
     1261 caaggggctt ggctatgaga aggggaaacc tgtgggcctg gtgggtgtca cagagttgtc
     1321 cgatgcacaa aagaagcagc taaaagaaca gcaggagatg cagcagatgt atgacatgat
     1381 tatgcagcac aagcgtgcca tgcaagacat gcagcttctg tgggagaagg cgctgcagca
     1441 acaccagcat ggctatgaca gtgacgagga ggtagacagt gaactgggca cctgggagca
     1501 ccagctgcga cgcatggaga tggacaagac acgggagtgg gcagagcagc tgacacagat
     1561 gggtcggggc aagcacttca tcggagactt cctgccccct gatgagctag agaagttcat
     1621 ggagaccttc aaggccctga aggagggcag agagccagac tactcagagt acaaggagtt
     1681 taagctgaca gtggaaaaca ttggctacca gatgctcatg aagatgggct ggaaggaggg
     1741 cgaggggcta ggcactgagg gccagggcat caagaaccca gtgaacaagg gtgccaccac
     1801 aattgatgga gctggctttg gcattgaccg gccagctgaa ctctcaaagg aggatgatga
     1861 gtacgaggcc ttccgcaaga ggatgatgct ggcctaccgc ttccggccca accctctgaa
     1921 caaccccaga cggccctact actgaatatt ctggaaacac aaagtctact ttcagattgg
     1981 acatccttgg actgtggaat gttctggcat ccatctctgc cctgttgtca caagtgttgt
     2041 gctgtgtatt aaaatcccaa tgcttacctg cccagcaaaa aaaaaaaaaa aaaaaaaaaa
     2101 aa
//
