LOCUS       XM_039095903            1576 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus succinylCoA:glutarate-CoA transferase
            (Sugct), transcript variant X6, mRNA.
ACCESSION   XM_039095903
VERSION     XM_039095903.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051352.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039095903.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1576
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1576
                     /gene="Sugct"
                     /gene_synonym="RGD1308114"
                     /note="succinylCoA:glutarate-CoA transferase; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 ESTs, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 11 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:361253"
                     /db_xref="RGD:1308114"
     CDS             136..1188
                     /gene="Sugct"
                     /gene_synonym="RGD1308114"
                     /codon_start=1
                     /product="succinate--hydroxymethylglutarate
                     CoA-transferase isoform X5"
                     /protein_id="XP_038951831.1"
                     /db_xref="GeneID:361253"
                     /db_xref="RGD:1308114"
                     /translation="MLRMLARAVAFRRSGRGQAGGRGLWTGRPQSDCDSMKPLEGVRI
                     LDLTRVLAGPFATMNLGDLGAEVIKVERPGYGQTGPMSHRAGYDAIASAMSGLMHITG
                     PEDGDPVRPGVAMTDLATGLFAYGAIMAGLIQRYRTGKGLFIDCNLLSSQVACLTQVA
                     ANYLIGQKEAKRWGTAHGSIVPYQAFKTKDGYLVIGAGNNQQFAVLCKILNLPELIDD
                     SKYRTNHLRVQNRKELVKILSARFAEEVTAKWLCLFEGSGIPYGPINSLKDVFSEAQV
                     LHNGLVMEMNHPTVGKISVPGPAVRYSKFKMSEAKPPPLLGQHTRHILKEVLRYDEGV
                     IGELLCSGVIEQHETE"
ORIGIN      
        1 gagaccaggc ggaatgtctg ggcggaggag gcggggttgg tgaagggggc ggggcgggcg
       61 gaggggacgg gactggctga ggggccaaag gtcaaggaag ggagctctgg ggcgctctca
      121 ttgggttgag gggcgatgct gcggatgctg gccagggcgg tggcttttcg gagatccggc
      181 cgaggccagg ccggcgggag ggggctgtgg accggccgcc cacagtcaga ttgtgacagt
      241 atgaagccac tggagggtgt gagaattctg gatctaacaa gagttctggc tggacctttt
      301 gccacgatga atttaggaga tctgggagca gaagttataa aagtggagag accaggatat
      361 ggccagacag ggcccatgtc tcacagagca ggctatgatg ctattgcctc tgctatgtct
      421 ggtctaatgc acatcacagg acctgaggat ggagatcctg ttcgcccagg agtggccatg
      481 actgatcttg ccactggcct ttttgcctat ggggcgatta tggctggcct catacaacgt
      541 tacagaactg gaaaaggatt gtttatcgat tgtaatctac tgtcatccca ggtggcatgt
      601 ttgacccaag tagctgccaa ttatcttatt ggacaaaagg aagccaaacg ctggggcaca
      661 gctcatggca gtattgttcc gtatcaggcc tttaagacca aggacggcta tcttgtcatt
      721 ggagcaggaa ataaccagca gtttgctgtt ttatgcaaga tcttgaattt gcctgaattg
      781 attgatgaca gcaagtatag aacgaaccac cttcgggtac agaatagaaa agagcttgtg
      841 aaaatcctat cggcacggtt tgcagaagaa gtgactgcca agtggctttg tctctttgaa
      901 ggaagtggga tcccatatgg cccaatcaac agtctgaagg atgtgttttc cgaagcccag
      961 gtattgcaca atggcctcgt tatggagatg aatcatccca ctgtggggaa gatttcggtc
     1021 ccaggtccag ctgtgagata cagcaagttc aagatgtcag aggcaaagcc accccccctg
     1081 ctgggacaac acacaaggca catcctgaag gaggtcctta gatatgatga gggggtcatt
     1141 ggagagctac tctgctctgg tgtaatagag caacatgaaa ccgagtgaca gagaagaatg
     1201 cgtcagaaaa cttcacttgg ccagcccaga cagtgagtgc tctgtgcgtg cctttcccca
     1261 gtcttgatcc cactacaaag catggtgagg agaactgaag attacttgcc tggcatctct
     1321 ggggtaactt tagaattaaa gtctaatgcc catttagaaa cttactgttt tgaattcccc
     1381 ccgccccaga atataatttg tttatttgtg gactttgatt aattctaatt ttttcatcca
     1441 aaagaagtga taactgtttg gtgatggtat gttgttctga tttaattcct ccacaatgta
     1501 tacatgtatg gaaacatcaa attataaatt gtagttttga ttagtcagtt gaaaaataaa
     1561 acaaaacata aaaata
//
