LOCUS       XM_341092               2729 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus SDS3 homolog, SIN3A corepressor
            complex component (Suds3), transcript variant X1, mRNA.
ACCESSION   XM_341092
VERSION     XM_341092.8
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_341092.9.
            
            On Jul 26, 2016 this sequence version replaced XM_341092.7.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2729
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2729
                     /gene="Suds3"
                     /note="SDS3 homolog, SIN3A corepressor complex component;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 34 ESTs, 1 long SRA read, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 225 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:360819"
                     /db_xref="RGD:1305986"
     CDS             569..1567
                     /gene="Suds3"
                     /codon_start=1
                     /product="sin3 histone deacetylase corepressor complex
                     component SDS3 isoform X1"
                     /protein_id="XP_341093.4"
                     /db_xref="GeneID:360819"
                     /db_xref="RGD:1305986"
                     /translation="MSAAGLLAPAPAPAAAPPAPEYYPEDDEELESVEDDERSCRGRE
                     SDEDTEDASETDLAKHDEEDYVEMKEQMYQDKLASLKRQLQQLQEGTLQEYQKRMKKL
                     DQQYRERIRNAELFLQLETEQVERNYIKEKKAAVKEFEDKKVELKENLIAELEEKKKM
                     IENEKLTMELTGDSMEVKPIMTRKLRRRPNDPVPIPDKRRKPAPAQLNYLLTDEQIME
                     DLRTLNKLKSPKRPASPSSPEHLPATPAESPAQRFEARIEDGKLYYDKRWYHKSQAIY
                     LESKDNQKLSCVISSVGANEIWVRKTSDSTKMRIYLGQLQRGLFVIRRRKFLTYRD"
ORIGIN      
        1 ccacacactc cggctgtcca ggcttccaag cccaccacgg ggacagttta tgtcattcac
       61 ctgcttgaat cagaccatgc tacctagaca gggctttgca aagcctccgc ccatcaggtc
      121 gcatcgatac actttagttt tgactccagg cgccgcctgg tggccgtttc cggaagtgtc
      181 ctcccaacct ccgggtcctg actgcgggca cggctgccca tggatatgcc tgaccccaga
      241 gacccctgcc ttcgcccctc ccccgtggcc gattgaggat tcataagaca gcgatgacga
      301 cgctgctgtg tcagagaacg tggagcccgg cgtctccgcc actccctcga ggacggctgg
      361 atcaggctgt caccgggcag cctacgaccc ggaagtagcc cggtgcgcga ggcccccgtt
      421 gcccagcgcg ggcgccgggg gcggagctcg gcgccgaggc agaccgggtg tccgaggctc
      481 cggctgcgcg aggtgggggc tgtccggggc gcagccaggc ggccgcgatc tccgcgggac
      541 acgctccgct gcggcccgag gcggcgacat gagcgccgcg gggctgctgg ctccggcgcc
      601 cgctccggct gcagcgccgc cggccccgga gtactacccc gaggacgacg aggagctgga
      661 gagcgtcgag gacgacgagc gcagctgccg gggccgagag tccgacgaag acactgagga
      721 tgccagtgag accgacctgg ctaagcacga tgaggaagac tacgtggaga tgaaggaaca
      781 gatgtaccag gacaaactgg cctctctgaa gaggcagctg cagcagctgc aggaaggtac
      841 gttacaggaa tatcagaaga ggatgaagaa gctggaccag cagtacagag agaggatccg
      901 gaatgcagaa ctcttcctcc agctagaaac ggagcaggtg gaaaggaatt acattaagga
      961 gaagaaggcg gctgtgaaag agtttgagga caagaaggta gagctgaagg agaacctgat
     1021 tgccgagctc gaggagaaga agaagatgat tgagaatgag aagctcacga tggagctcac
     1081 cggagattct atggaagtga aacccatcat gaccagaaaa ttacggaggc gaccaaacga
     1141 tcctgtcccc attccagaca agaggagaaa accagctcct gctcagctaa actacttgtt
     1201 gacagacgag cagatcatgg aagatctgag aacactgaac aagcttaagt cacccaagag
     1261 accagcctcc ccatcctctc ctgaacactt gcctgccaca cctgcagagt ctccagcaca
     1321 gagatttgag gcgcggatag aagatggcaa actgtattat gataagagat ggtaccacaa
     1381 gagccaggcc atctacctgg agtctaagga caaccagaaa ctgagctgtg tgatcagctc
     1441 agtaggagcc aatgagatct gggtgaggaa gaccagcgac agcaccaaga tgcggatcta
     1501 cctgggccag ctgcagcgcg ggctcttcgt gatccgccgg cgaaaattct taacttaccg
     1561 ggactagctc cttggcctgg gacatggaga gcactgtgga gtcttcaggg cgctcacgtg
     1621 gccgccacct ccatctctgt ccgctctgtc ctgctccgcc tcttccagaa ctcggtcacc
     1681 agagactctt gctttcggag tccggggtca ccaccttcct tgtattccac tcttgtcctg
     1741 ttttgtttat acttgatcct ttttccgacc tccttggagt ttgaagggaa gctgttttta
     1801 acaattatct ctaggtctct gaagagcatc gggtgtgctt tcctgcctga atctgattgg
     1861 cagatcgtgt gcctgcttcc taccttgggc ccagaagcgt ggggcaggag agttctcctg
     1921 actctgcttt tcttggagaa ataaatgaca cagaacatct catctgcctt gggctgctac
     1981 tccgctgact ggcttcactc tggataccgc aaccagcgga cggggctggg ggaggggcgt
     2041 ggcatgttca ccgcaggctg gagtcaccac tgcgaacagt ctccagcaaa cacgatttat
     2101 ttacacaccc cagtccctgt tcagggtgga agaagtggcc atttcagaag tttgtgtctg
     2161 taactcctct ctctagctcc caatggctgc aagtatttat cgtgtgcccc actgtggtgt
     2221 gggttctcgg taagtggggt ggcagagtgg gtgccccatg tgtggtccgt gcctcactcc
     2281 tgagctggac ccaccgtgat gctgggctgt tcaacaccat ggaaccccca acctcccctg
     2341 aggtttgtcc cgtgtcagtg acaaggagag ctctgtcaaa gctgcagcca ccacctctgt
     2401 gtgctgcttg agccccagcg aagccccctg ccttggccct cttgccccct gggccggcca
     2461 ttggagaaag gactggtgcg gctgggcaga ggactcctca cgctctagct gccagcatgc
     2521 catgggaaac gaagcggacc agagtgccta tcaccacctc tgggctatca gtagactgtc
     2581 cacaccttgt cttgctctta gcccctcgga ctccatccgt gttgccccct ggtgtcccac
     2641 ggaagactgt acagaaccat tgtttattta tagccactct cccattggat ttttaagaaa
     2701 acaggataaa cgatgatgtt tatgaatta
//
