LOCUS       XM_039101677            3318 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus SUB1 regulator of transcription
            (Sub1), transcript variant X4, mRNA.
ACCESSION   XM_039101677
VERSION     XM_039101677.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039101677.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3318
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3318
                     /gene="Sub1"
                     /gene_synonym="Rpo2tc1"
                     /note="SUB1 regulator of transcription; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 mRNAs, 54 ESTs, 17 long SRA reads, 7 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:192269"
                     /db_xref="RGD:621582"
     CDS             21..404
                     /gene="Sub1"
                     /gene_synonym="Rpo2tc1"
                     /codon_start=1
                     /product="activated RNA polymerase II transcriptional
                     coactivator p15 isoform X1"
                     /protein_id="XP_038957605.1"
                     /db_xref="GeneID:192269"
                     /db_xref="RGD:621582"
                     /translation="MPKSKELVSSSSSGSDSDSEVEKKLKRKKQVVPEKPVKKQKPGE
                     SSRALASSKQSSSSRDDNMFQIGKMRYVSVRDFKGKILIDIREYWMDSEGEMKPGRKG
                     ISLNMEQWSQLKEQISDIDDAVRKL"
ORIGIN      
        1 gcaagtcacc ggctgatcaa atgcctaaat caaaggaact tgtttcttcg agctcttcag
       61 gcagtgattc tgacagcgaa gttgaaaaaa agttaaagag gaaaaagcaa gttgttccag
      121 agaaacctgt gaagaagcaa aagcctggtg agagttctag agcactggca tcctccaagc
      181 agagtagcag cagcagagat gataacatgt tccagattgg aaagatgaga tatgtcagtg
      241 ttcgggactt taaaggaaaa attctaattg atattagaga atattggatg gactcagaag
      301 gtgaaatgaa accagggaga aaaggtattt ctttaaacat ggaacaatgg agccagctga
      361 aggaacagat ctctgacata gatgacgcag taagaaagct gtaaagtctg agccatatca
      421 agcctgtact gtcgtagctg ttttactctg tcttttcaca ttggcttttg ttttctaaat
      481 gttgttttcc acgctgttgt atatttggat tgcagaacaa tttgtaagac aaatactttt
      541 ttttaatgtg cattattaaa atgttctaag tgaagctaat tgtcaacttt attaaagagg
      601 attgctttgt gccccttacc tagtgtaaaa taaagtcaga tcattacaat cttaactgtg
      661 gtagcctttt ttgataaaaa aaaataaact agttactgtt taaggcccaa aaaacaacct
      721 ttgtaggcac gttgttgagt cagcttacat tcagaaggat gtattacatt gagctcttag
      781 attgctttgt gaaatgtata ctcagtctct ttccaacctg atttgctgaa ttttcctctc
      841 caggacttct ccctaccaca atcctttttt tcttcagttt tcttagtatt cacttttcca
      901 tcactctcta ctcagatata ttatgctgat ttggaaagtc aagctgtcca tgttgttgcc
      961 tccaaagtct actgtgttaa ttattagcag attatctgtt tagtaacatg gcttaaatgg
     1021 gaactccaag caagtgtgtg tcattattca tagtgcgctg tggagatgtt acttagtcta
     1081 cagaacatag tgactgatgt ctgatgaacc gtctctcggt aaacctttgt gctgggatgg
     1141 tggttataaa atcagatatt aaactagatt agacttgtaa aaatcgtgac acttactggc
     1201 ctcctattct aacaaagagt gtggattata tgtagtcaga catgtcactg agctttactg
     1261 tcatggtagg ttacatggct agtttttata gagtcggctg ttttacagtc tggacaagag
     1321 acttccagat ttgatgttta aatttgatag acattttcat gagttttcat tttaaccagg
     1381 atgattaaac agacaggcac atgtgttagg gctattgctc cagtgaaaag gaagggcata
     1441 gtgttctgag ggaaagtgtt tgcaaaggaa aaatcacact gaagggagtt agcctgtgat
     1501 gtgaaaggaa ctttcttgaa actaaatgca catggtatgt tggcgataac agtaagatgg
     1561 gtctaggtag aataataact aacaaggatg gtttatacat gtgaaaaatg ctaccactaa
     1621 gggctgccat atcagaattg ccctatctta ttaatcagtt taattcccat cgtcttaagc
     1681 attttatgga attgtcaagg atttaattta aaaaataatc tgtcaggcct catgtggtta
     1741 acttatcctc cttacagaca ttctttaggt aactttttag tgcgttactc caaattgaca
     1801 tattaaaaaa aagagagaac ctaagtgttt aagatatata taccatagct cattcctgag
     1861 ggatgctacc cttataattt gttgtatttc attgattaat tatttaccat ttaaagaaag
     1921 gatagttaga acataaaact ttggttttgg tatcgatgag gagggaataa tagacaaatt
     1981 ttctaggctg tgaattcaga gggcgtatgt gcatttcagc tgtctgcttc atggagaccc
     2041 gcagagacct gtcatctgtt acctaggctg cttagcatag taaaacctcc acttggaaag
     2101 ctttttctgg cataatttgt tagactgata gctaaattca ttcactaatg ttacaccaga
     2161 gttactaatc tttttctttg tgtgtgttga aaaggagaat taggttaaaa ggggcttttc
     2221 agacgaaaag aaaggctaga gtccttctat tttgcattca gatgcctttc tccttagtgt
     2281 cttagtttct tttctcttgc tgtgatgaag tgccctgatg aaagcagctt aagggagaag
     2341 gggtttattc ttaatcgcag ttccaggtta cagtccattg ttgcatggag tcaaaaacaa
     2401 ctacaggact ccagacatcc ggacacacgg ctccatggcc aggaaaccga gagcagtggt
     2461 tgcatgctca gttccctctc cttttcattt aacctgactt agcctgtgag ctggtcctgt
     2521 ccgcagtagg caagagttct ccacacatgc ctagaggcct atcttcaggt ggttctaggt
     2581 ttagttgaat ggataacact atcatagtaa gttttctccc aggaagaagg cttgacattt
     2641 tgaggtataa gtatcttatt ttgtaatgct aaaatgatta gatctgctct caggtttgcc
     2701 ctttaatacg ccccatagca aggcctccaa atgggttttc ctcttagagt aaaagccttt
     2761 agccaatttc cacaatcact ggaaaagaaa aacttgtatt ttcttttgtt ttgcgtcaca
     2821 aatgcctaaa atcttgggaa atactacctc attaacctag tcaagatgct ggtgataacc
     2881 agtctattct gcgtagtatc ttagaatcag caacttaggg aaaaccaagg aggaaaatgt
     2941 gtcctgacct ggctacaaag ggaggagggg attgaacgtt tatgtaagtg ttccggacag
     3001 gaatgttagc acagagcttg ccacaaagct tgaaagtctt aactgttgag ttatatttag
     3061 gtatcttttt tggatttctc tgcagttcat attttatgga aattaatgta gtgaaacact
     3121 aaagatctct tttttttcct taaggcattt tttttccaga taaactataa tgtaaacatg
     3181 catatagtga aacgtgtgta attctgtaat tgtggaatgc ctgtatgctt tgtttggtac
     3241 atcttccatg ggggtgtcaa tgaacctatt attccacttg tgaatatttt aaatgttgaa
     3301 ataaaaacaa gaaataga
//
