LOCUS       XM_006230348            2045 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus syntaxin 4 (Stx4), transcript variant
            X5, mRNA.
ACCESSION   XM_006230348
VERSION     XM_006230348.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006230348.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006230348.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2045
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2045
                     /gene="Stx4"
                     /gene_synonym="Stx4a"
                     /note="syntaxin 4; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 27 ESTs, 1 long SRA read,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 178 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:81803"
                     /db_xref="RGD:621019"
     CDS             516..1238
                     /gene="Stx4"
                     /gene_synonym="Stx4a"
                     /codon_start=1
                     /product="syntaxin-4 isoform X5"
                     /protein_id="XP_006230410.1"
                     /db_xref="GeneID:81803"
                     /db_xref="RGD:621019"
                     /translation="MRDRTHELRQGDNISDDEDEVRVALVVHSGAARLSSPDDEFFQK
                     VQTIRQTMAKLESKVRELEKQQVTILATPLPEESMKQGLQNLREEIKQLGREVRAQLK
                     AIEPQKEEADENYNSVNTRMKKTQHGVLSQQFVELINKCNSMQSEYREKNVERIRRQL
                     KITNAGMVSDEELEQMLDSGQSEVFVSNILKDTQVTRQALNEISARHSEIQQLERSIR
                     ELHEIFTFLATEVEMQVRTALS"
ORIGIN      
        1 ctgtcacgtg atgagggggc gccatggggt gatgtgagat acgaggctct cagactgcgt
       61 gcagatgacg cattcccaac cctttgggca actagatttc agttccaata tgagatgttc
      121 cggtaaagga ggggggaggg cgggctctgg agcctggcag cctcgcttcc gttccgctgc
      181 aactgctgct tccgacctcc gcctttccct ctagcgagga cgagacaagg cctcgcgcgc
      241 atgctccgaa tcatcctccg aggggcgggg ttgcagtcgc gggagcagga tggggggaag
      301 agaagggaat tccaacctgt agaactttgg gggtcctatg gtcgggttct tccccaccac
      361 tgtggatggt gaaaggggtg tggcctttgg cggctcctgg gggtattgga gttcgcaagg
      421 tgagggaggg ggtgtcaagt gtgagagagg tgcaggactt ccaaatttag aaccttgagg
      481 ccctttgggc tcaggtccag ggcactccgg ccaccatgcg cgacaggacc catgagttga
      541 ggcaggggga taacatctca gacgatgaag atgaggttcg agtcgcgttg gtggtgcact
      601 caggtgccgc ccggctgagc agcccggacg acgagttctt ccagaaggtg cagacaattc
      661 ggcagactat ggccaaactg gagagtaaag tccgggagtt ggagaaacag caggtcacca
      721 ttctggccac gcctcttccc gaggagagca tgaagcaggg cctgcagaac ctgcgagagg
      781 agatcaaaca gctggggaga gaagtccggg cacagctaaa agccatagag ccccagaagg
      841 aagaagctga tgagaattat aattcagtca acacaagaat gaagaaaacc cagcatgggg
      901 tcctgtccca gcagtttgtg gagctcatca acaagtgtaa ctcaatgcag tccgagtacc
      961 gagagaagaa cgtggagcgc attcggcggc agctgaagat caccaatgct ggaatggtgt
     1021 ctgacgagga actggagcag atgctggaca gtgggcagag tgaggtgttt gtgtctaata
     1081 tactgaagga cacacaggtg acccggcagg ccctgaatga gatctctgcg cgacacagtg
     1141 agatccagca gttggagcgc agcatccgtg aactccatga gatcttcact tttctagcta
     1201 ccgaggtgga gatgcaggtt agaacggccc tgtcctgacc ttctgcggtg agctgcacag
     1261 ttgttgacca ttctcctctg cattctcagc tggcagtcat gggatatcac tgtcatccag
     1321 tggcagcacc aggacctaag ctggtagtac cagaagcagg cagggacagg gatggagact
     1381 ggcctagaaa aatagatgaa ttcagacaaa agtttactag ctatgggaaa ggcactagtc
     1441 ctatgagccc atggctgcag gcctctgctg caaatggagg ttatgtagga caatggaaca
     1501 gagaatggac agcctgacgg ggtgggggcc agaagcctta ctctcaacag ctctggtctg
     1561 ccttagcttt gtcagtgtag ctttttatct gccgataatg tcttgattag ccaggcagta
     1621 gtggtgcatg cctttgatcc cagcacacga tgcagaggca ggtgaatctc ttgagttcta
     1681 ggctaacctg gtctactagt tccaggatgg ccagagctac aaagagaaac cctgtcttta
     1741 agcctcccct cccctaaaaa aaaagagtgt cagcttctgt ggccaggtca caccaagcag
     1801 tttgctgctc agtgcctctg tggcaggtca tggccagttt gcacctctcc acagcctggg
     1861 cccaggttgg aagcaccacc tggcttttgg aagatttttg taccaaggca aattcccaag
     1921 tactctaagg gaccatctcc tcgacttgcc caacccactg cccccctcac cagaaaaagc
     1981 agcagagatg ggttctatat tttcattcca aataaaatgc tctttcttta aaaaaaaaaa
     2041 aaaaa
//
