LOCUS       XM_039089101            2166 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus syntaxin 2 (Stx2), transcript variant
            X3, mRNA.
ACCESSION   XM_039089101
VERSION     XM_039089101.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039089101.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2166
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2166
                     /gene="Stx2"
                     /gene_synonym="Epim"
                     /note="syntaxin 2; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 mRNA, 26 ESTs, 3 long
                     SRA reads, 4 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 46 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:25130"
                     /db_xref="RGD:2558"
     CDS             167..991
                     /gene="Stx2"
                     /gene_synonym="Epim"
                     /codon_start=1
                     /product="syntaxin-2 isoform X3"
                     /protein_id="XP_038945029.1"
                     /db_xref="GeneID:25130"
                     /db_xref="RGD:2558"
                     /translation="MRDRLPDLTACRKSDDGDNAVIITVEKDHFMDAFFHQVEEIRSS
                     IARIAQHVEDVKKNHSIILSAPNPEGKIKEELEDLNKEIKKTANRIRGKLKAIEQSCD
                     QDENGNRTSVDLRIRRTQHSVLSRKFVDVMTEYNEAQILFRERSKGRIQRQLEITGRT
                     TTDEELEEMLESGKPSIFISDIISDSQITRQALNEIESRHKDIMKLETSIRELHEMFM
                     DMAMFVETQGEMVNNIERNVVNSVDYVEHAKEETKKAIKYQSKARRGVLCALGRQC"
ORIGIN      
        1 gcgcaagcgc agagagtgcg ggcgcggttg ccgtggcagc gcctgcccga gggagggcgg
       61 cggcgcgggg ccaggacccc ggcgggcaga ggcggcgacg cggccacccg agagtgtgcg
      121 gcggggcagc tgagcggcgg gagctccgcc ctgctggctg gtggggatgc gggaccggct
      181 gccggacctc acggcgtgta ggaaaagcga cgatggagac aatgctgtca tcatcacggt
      241 ggagaaggac cacttcatgg atgccttctt ccatcaggtg gaggagattc gaagcagcat
      301 agccaggatt gctcagcacg tggaggatgt gaagaagaac cacagcatca tcctctctgc
      361 cccaaaccca gaaggaaaaa taaaagaaga gctggaggac ctgaacaaag agatcaagaa
      421 aactgctaac aggatccggg gcaagctgaa ggctattgag cagagttgtg atcaggacga
      481 gaatgggaac cgaacttcag tggatctgcg gatacgaagg acccagcact cagtgctgtc
      541 acggaagttt gtggacgtca tgacagaata caatgaagca cagatcctgt ttcgggagcg
      601 aagcaaaggc cgaatccagc gccagctaga gatcactggg aggaccacca ctgacgagga
      661 gctggaggag atgctggaga gcgggaagcc gtccatcttc atctcggaca ttatatcaga
      721 ttcacagatt actaggcaag ctctcaatga gatcgagtca cgccacaaag acatcatgaa
      781 gctggagacc agcatccgag agctgcacga gatgttcatg gatatggcca tgtttgtcga
      841 gactcagggt gaaatggtca acaacattga gagaaacgtg gtgaactccg tagattacgt
      901 ggagcacgcc aaggaagaga ctaagaaagc catcaaatac cagagcaagg ccagacgggg
      961 tgtgctctgt gctctcggcc gacagtgctg acgaagagac ttcgtgccag gcctgatctc
     1021 tgttcgtgtc ttgtttgcag aatcatcaca gaactgtgtt tttgtaaggc acctgtaatt
     1081 ttaagtatct gtaagttaag ttccttaata tattaacatc taaactccct tttctaagct
     1141 agacactgcc ttgtgaagga caatgggcca gccctaggca gccatgtcga ggttgctgtt
     1201 gtccctgaaa acatggcctc gcagcccctc agggcccttc ttcagtgcct tctggtgacc
     1261 ctgactagga agtgtaaggg tctgaagagg tgacaagcgg ccacacgctg cactcgtgtt
     1321 gctcttcctt gttcactcat ggtaatggag tctcggcgac aaagatggag gcgagacttg
     1381 gtgctcacta gactctaggg aaccgtcccg ggcacaaagc cactcccgga cagcatccga
     1441 aggaccagat cctcagccca gcgcccacta gtgcccagag ttcctaggaa gccaggtgta
     1501 aagctgtgcg ctgcttcacc cttgtgaata ggtggcccag tgactgcata tctgttgaga
     1561 gctagtgtgt gaaggacacc atgcctagtg tgtgtgaggg ctcagtctgc cccagcctca
     1621 ctcggtggga tctggaacac caagtgctac gaactatcta gaaaccacga tcctctcagt
     1681 ggtgagtgtg ccacactgtc accgccttcc acctcccagc ctgacacccc gtgtgccgag
     1741 agctactgca gcaggctggg ctatgtgtcc tggtccagag ctagcctgca gtgcagacgc
     1801 tctggctgat agctcaccct tcctgtctgc ttcagtgccg tcggatttag ccgcagagga
     1861 cacacatacc acataccacc caggcttcca ccacccacgg ccaggtttcc ttcaagtcca
     1921 acctgagccc ttggcctgtg ctcacccagt gctcaggagg cctctcggcc aggccggcgg
     1981 ctgcatctgg ttttccagtg aagcaggagt gtgtgggtga gtgagttagc acttcacata
     2041 tgtctctatg ccgacttcat agcctactta aaaatacatt tacagagtcc cttgttactt
     2101 tttccaagcc tttcttcaaa tattttgtgt ttacattaaa aagttctcag agaagcaaac
     2161 aagaaa
//
