LOCUS       XM_006249253            2755 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus syntaxin 2 (Stx2), transcript variant
            X4, mRNA.
ACCESSION   XM_006249253
VERSION     XM_006249253.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006249253.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006249253.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2755
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2755
                     /gene="Stx2"
                     /gene_synonym="Epim"
                     /note="syntaxin 2; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 2 ESTs, 4 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 136 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:25130"
                     /db_xref="RGD:2558"
     CDS             1791..2573
                     /gene="Stx2"
                     /gene_synonym="Epim"
                     /codon_start=1
                     /product="syntaxin-2 isoform X4"
                     /protein_id="XP_006249315.1"
                     /db_xref="GeneID:25130"
                     /db_xref="RGD:2558"
                     /translation="MDAFFHQVEEIRSSIARIAQHVEDVKKNHSIILSAPNPEGKIKE
                     ELEDLNKEIKKTANRIRGKLKAIEQSCDQDENGNRTSVDLRIRRTQHSVLSRKFVDVM
                     TEYNEAQILFRERSKGRIQRQLEITGRTTTDEELEEMLESGKPSIFISDIISDSQITR
                     QALNEIESRHKDIMKLETSIRELHEMFMDMAMFVETQGEMVNNIERNVVNSVDYVEHA
                     KEETKKAIKYQSKARRKKWIIAAVVVAVIAVLALIIGLSVGK"
ORIGIN      
        1 ggtgcgcgtg cccgaggccc ggcttgcgtc agccatgcgt actaggcatg gacacggcct
       61 gggattcatg cgtggggttt tgtggtccta gctgtggacg ggaccggatg cagttagtcc
      121 aagcgttctg caccccggag cccttcctct gttgcatagt ccgagtaatc catttctcag
      181 aaaagacccc acccaggctc cctccggagc agcaatggac cagggaggga tcctcacagg
      241 cctggagaaa taacagatta ggcctgctga gagccaagtt ccactcccca aagcactagc
      301 aaatacagat gctgctagga aaatagaaaa tgtatctctg atgaccagag cttggggccc
      361 tgctgttact ttgtactatg caatctaaaa ggagccgagg tgtggaagat gggaaaatgg
      421 ttgtgtgtgc tacaaagact attacgtaac gttaacatag tattgtgtga tggaatgcca
      481 gttacatgtt tatataaata caaaattact atattgttgg gtgtgtgtaa caagtcagtt
      541 ccaaggggct atactgtgaa ccgtgttcaa tagaggttag aaagggtggt gatcacttta
      601 ggagaaaact gttaacccac ctagttccag ttcggtaggt tgctgggtga tgagagcacc
      661 agcgaccctc tcccctggag aacttaccac aaagttactg tccgggcatc tagcctgcag
      721 aacggcatca tcaggtggct tggtttatgt tactaactag ctgacccaaa cttagaattt
      781 acaaagaccc tcattctagg aggcagagag aaacaagaaa ctacactcaa gccggcgtag
      841 gcgccgcttt tctgccatca tcgcccagtc tccaggttta cagctgctgg ctggtttaca
      901 gcgttgtgtt tgccatccaa tgtgaactgc aaacctattc ttagcctgaa ctttaaaact
      961 tggcagctgc ttagcatgta tgagaactgg ggcgggggtg ggggtcggga ggcagctata
     1021 gacaggttaa tttgtacagc ctaggggaaa agttgcggtt gtggaaggga ttgtagcttg
     1081 tgagagttag tctatagggt ttagggttgc ctagcacaca aacctctggg tgtgtctctt
     1141 gtactcacgg agaggtttaa ctgaacctgg gctgtatgct agactgaata ggaaggagaa
     1201 agggaactga acaccagcct ccatctctct gcttcctggc acctcacgct cctgctgccg
     1261 tgccttctac cttccacaga tataatagat tgtaccactg aaactgtgag ccaaaactaa
     1321 actaactaaa aattgctttt tatcaagtat ttttgtcata gcaatgtgca aaatagctaa
     1381 ttacattttc ttctaaatcc ccaaatctct tgtttaattt gtatttgaga taacccctgt
     1441 cagctcctgt gatggacatc tcgttctcca ccaatggtgc tgttttagac ttgcgaccta
     1501 gtgtgtgtct gggggcgagg ggtcaacctt gaagcatata tcctgtagta tttagtcaca
     1561 gtgcgaagct tcgagctccc accaccatgg agtgagaccc aacgccatgc catcctgccg
     1621 tgatggactg tatcccccgt gaaccaaggt gcctgccgtg atttgttgcc tgctcacagg
     1681 cccaaagcag tgaaccagcc aaccgaccac aggctgaatc cttgaaaccc tgtaggaaaa
     1741 gcgacgatgg agacaatgct gtcatcatca cggtggagaa ggaccacttc atggatgcct
     1801 tcttccatca ggtggaggag attcgaagca gcatagccag gattgctcag cacgtggagg
     1861 atgtgaagaa gaaccacagc atcatcctct ctgccccaaa cccagaagga aaaataaaag
     1921 aagagctgga ggacctgaac aaagagatca agaaaactgc taacaggatc cggggcaagc
     1981 tgaaggctat tgagcagagt tgtgatcagg acgagaatgg gaaccgaact tcagtggatc
     2041 tgcggatacg aaggacccag cactcagtgc tgtcacggaa gtttgtggac gtcatgacag
     2101 aatacaatga agcacagatc ctgtttcggg agcgaagcaa aggccgaatc cagcgccagc
     2161 tagagatcac tgggaggacc accactgacg aggagctgga ggagatgctg gagagcggga
     2221 agccgtccat cttcatctcg gacattatat cagattcaca gattactagg caagctctca
     2281 atgagatcga gtcacgccac aaagacatca tgaagctgga gaccagcatc cgagagctgc
     2341 acgagatgtt catggatatg gccatgtttg tcgagactca gggtgaaatg gtcaacaaca
     2401 ttgagagaaa cgtggtgaac tccgtagatt acgtggagca cgccaaggaa gagactaaga
     2461 aagccatcaa ataccagagc aaggccagac ggaaaaagtg gataattgct gctgtggtgg
     2521 tggctgtcat tgctgtcctg gctctaatca ttggcttgtc ggttggcaaa tgattgcgta
     2581 gatggcgctg ggtgcttgcc tctccctcag ggtggcaaag gtgatgttcg tcctcatctg
     2641 tgtagtcact ttgcttgtga tccttggaat tattctagca acagcattgt catagcaacc
     2701 gcaccccaag agctctttgt cctcagagac tctgaccaca cctgcagcat ggccg
//
