LOCUS       NM_001012151            1516 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus syntaxin 18 (Stx18), mRNA.
ACCESSION   NM_001012151 XM_341231
VERSION     NM_001012151.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1516)
  AUTHORS   Iinuma,T., Aoki,T., Arasaki,K., Hirose,H., Yamamoto,A., Samata,R.,
            Hauri,H.P., Arimitsu,N., Tagaya,M. and Tani,K.
  TITLE     Role of syntaxin 18 in the organization of endoplasmic reticulum
            subdomains
  JOURNAL   J Cell Sci 122 (Pt 10), 1680-1690 (2009)
   PUBMED   19401338
REFERENCE   2  (bases 1 to 1516)
  AUTHORS   Laniosz,V., Nguyen,K.C. and Meneses,P.I.
  TITLE     Bovine papillomavirus type 1 infection is mediated by SNARE
            syntaxin 18
  JOURNAL   J Virol 81 (14), 7435-7448 (2007)
   PUBMED   17475643
REFERENCE   3  (bases 1 to 1516)
  AUTHORS   Yamaguchi,T., Dulubova,I., Min,S.W., Chen,X., Rizo,J. and
            Sudhof,T.C.
  TITLE     Sly1 binds to Golgi and ER syntaxins via a conserved N-terminal
            peptide motif
  JOURNAL   Dev Cell 2 (3), 295-305 (2002)
   PUBMED   11879635
REFERENCE   4  (bases 1 to 1516)
  AUTHORS   Hatsuzawa,K., Hirose,H., Tani,K., Yamamoto,A., Scheller,R.H. and
            Tagaya,M.
  TITLE     Syntaxin 18, a SNAP receptor that functions in the endoplasmic
            reticulum, intermediate compartment, and cis-Golgi vesicle
            trafficking
  JOURNAL   J Biol Chem 275 (18), 13713-13720 (2000)
   PUBMED   10788491
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC079183.1.
            
            On Feb 11, 2005 this sequence version replaced XM_341231.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC079183.1, SRR8487231.154827.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760434
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1516
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /map="14q21"
     gene            1..1516
                     /gene="Stx18"
                     /note="syntaxin 18"
                     /db_xref="GeneID:360953"
                     /db_xref="RGD:1310058"
     exon            1..182
                     /gene="Stx18"
                     /inference="alignment:Splign:2.1.0"
     CDS             15..1019
                     /gene="Stx18"
                     /codon_start=1
                     /product="syntaxin-18"
                     /protein_id="NP_001012151.1"
                     /db_xref="GeneID:360953"
                     /db_xref="RGD:1310058"
                     /translation="MAVDITLLFRASVKTVKTRNKALGVAVGGGADGSRDELFRRSPR
                     PKGDFSSRAREVISHIGKLRDFLLEHRKEYINAYSHTMSEYGRMTDTERDQIDQDAQI
                     FMRTCKDAIQQLRTEAHKEIHSQQVKEHRTAVLDFVEDYLKRVCKLYSEQRAIRVKRV
                     VDKKRLSKLEPEPHTKRKEPASEKSSHNASQDSEEKPAAEDLPEKPLAESQPELGTWG
                     DGKGEDELSPEEIQMFEQENQRLIGEMNSLFDEVRQIEGKVVEISRLQEIFTEKVLQQ
                     ETEIDSIHQLVVGATENIKEGNEDIREAIKNNAGFRVWILFFLVMCSFSLLFLDWYDS
                     "
     exon            183..250
                     /gene="Stx18"
                     /inference="alignment:Splign:2.1.0"
     exon            251..366
                     /gene="Stx18"
                     /inference="alignment:Splign:2.1.0"
     exon            367..444
                     /gene="Stx18"
                     /inference="alignment:Splign:2.1.0"
     exon            445..511
                     /gene="Stx18"
                     /inference="alignment:Splign:2.1.0"
     exon            512..624
                     /gene="Stx18"
                     /inference="alignment:Splign:2.1.0"
     exon            625..713
                     /gene="Stx18"
                     /inference="alignment:Splign:2.1.0"
     exon            714..772
                     /gene="Stx18"
                     /inference="alignment:Splign:2.1.0"
     exon            773..842
                     /gene="Stx18"
                     /inference="alignment:Splign:2.1.0"
     exon            843..923
                     /gene="Stx18"
                     /inference="alignment:Splign:2.1.0"
     exon            924..1493
                     /gene="Stx18"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cggcgcgggt cgctatggcg gtggacatca cactgctctt cagggctagc gtcaagacag
       61 tgaagacgcg gaataaggct cttggagtgg ccgtgggtgg tggagccgat ggcagccgag
      121 acgagctgtt ccgcagaagc cctcggccca agggagactt ctccagccgg gcccgtgaag
      181 tgatttctca tattgggaag ctgagagatt ttctcctgga acacaggaag gagtacatta
      241 atgcctacag ccacaccatg tctgaatatg ggaggatgac agacacagag cgagaccaga
      301 tagaccagga tgctcagata ttcatgcgga cctgtaaaga cgcaattcag caactcagaa
      361 cagaagccca caaggagatt cattcccagc aagtgaagga acacaggact gcagttttgg
      421 atttcgttga agattactta aaaagagtgt gtaagcttta ctctgaacag agagccatcc
      481 gagtgaaacg cgtggtggat aagaaaagac tatctaagct ggagcctgag cctcatacaa
      541 agaggaaaga acccgcatct gagaaatcct ctcacaatgc ttcccaggac tctgaagaaa
      601 agcctgctgc tgaggacttg ccagaaaagc ctttggctga atcacagccc gaattgggaa
      661 cctggggcga tggcaagggt gaagatgagc tgtctccaga agagatacag atgtttgaac
      721 aagaaaatca acgactcatt ggtgaaatga acagcttgtt tgacgaagtg aggcaaatcg
      781 aagggaaagt cgttgaaatt tcgagactcc aagagatatt cactgaaaag gttttacaac
      841 aggaaaccga gatcgacagc attcaccagt tagttgtggg ggcaactgaa aatattaagg
      901 aaggcaacga agacatacga gaggccatca aaaacaacgc aggcttccga gtgtggatcc
      961 tcttcttcct cgtgatgtgt tccttttcct tgctcttcct cgactggtat gacagctagc
     1021 ccaccagggc ctggcctgca ccactgccct ggacagacca cgtgccagcg tgtgcctcat
     1081 ctgctgtggg gttgcgtaag gcccaagggc tgggaaagca tggcccccaa accaacctgt
     1141 gcacctcagg acctggaaat acatggactg ccagtgccct gtatgctctt cagggtgcaa
     1201 gataaaggta gtcaggagtt gcactgtcag gacaggccac atgcatggtg gaggctgagc
     1261 aacgcaagga tacagcacgc ctcctgtccc catctcctgc ctttcccaca ccagtagctt
     1321 cagggaagaa catgcctact gtttctaaaa tcgttagttc ttatttcctt gtggcatcta
     1381 atgtgtgccg gcttatatgt ggccgatatg tggctgatat attttgtcac cattttgtca
     1441 cagaaaatat tcacatctgc cttgtcaagc taataaacgc aattacagcc ataaaaaaaa
     1501 aaaaaaaaaa aaaaaa
//
