LOCUS       XM_006239066            1822 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus syntaxin 12 (Stx12), transcript
            variant X1, mRNA.
ACCESSION   XM_006239066
VERSION     XM_006239066.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006239066.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006239066.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1822
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1822
                     /gene="Stx12"
                     /note="syntaxin 12; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 25 ESTs, 5 long SRA
                     reads, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 148
                     samples with support for all annotated introns"
                     /db_xref="GeneID:65033"
                     /db_xref="RGD:620977"
     CDS             125..1090
                     /gene="Stx12"
                     /codon_start=1
                     /product="syntaxin-12 isoform X1"
                     /protein_id="XP_006239128.1"
                     /db_xref="GeneID:65033"
                     /db_xref="RGD:620977"
                     /translation="MSYGPLDMYRNPGPSGPQPRDFNSIIQTCSGNIQRISQATAQIK
                     NLMSQLGTKQDSSKLQENLQQFQHSTNQLAKETNELLKELGSLPLPLSASEQRQQKLQ
                     KERLMNDFSSALNNFQVVQRKVSEKEKESIARARAGSRLSAEDRQREEQLVSFDSHEE
                     WNQMQSQEEEAAITEQDLELIKERETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDS
                     IEANVESSEVHVERASDQLQRAAYYQDLRRQEDRRAVSSRPDWDNERFEIRLCFLFFF
                     FFSFFRNWGPNPGPCAELNPQPPDSVFKRKMERKERQLAAEHVAT"
ORIGIN      
        1 tacgcagtca cggccccttc cccgccctct ctcttcccgg ttttcctctc agctactggg
       61 cccggtcagt ggcagcttcc ggtaggagcg ccgtgaagcg cgaccccggt ctctgctccg
      121 tgtcatgtcc tacggtccct tagacatgta tcggaatccc gggccgtcgg ggcctcagcc
      181 ccgtgacttc aacagcatca tccagacatg cagtggcaac atccagcgga tcagccaagc
      241 cactgctcag ataaagaatt tgatgagcca acttggaact aagcaggact caagcaaact
      301 ccaggaaaat ttgcaacagt tccagcactc cacaaatcag cttgccaagg agacaaatga
      361 gttgctgaag gagttagggt ccttgcccct acccttgtct gcatcagagc agcgccaaca
      421 gaagcttcag aaggagcggc tcatgaatga cttctcgtcg gccttgaaca atttccaggt
      481 tgtgcagaga aaggtatctg agaaggagaa agaaagcatc gcgagagcga gggctggatc
      541 ccgtctttct gcagaagaca ggcaaagaga agagcagctc gtctcatttg acagccatga
      601 ggagtggaac cagatgcaga gccaggagga agaggcggcc atcactgagc aagacctgga
      661 acttattaaa gagagggaaa cggcgattca gcagctggag gctgacattt tggatgtcaa
      721 tcagatcttt aaagacttag ctatgatgat ccacgaccaa ggtgatctga ttgatagcat
      781 agaagccaat gtggaaagct cagaggtgca tgtggaaaga gcctctgatc agctacagag
      841 agctgcttac tatcaggacc tgagaagaca agaagacagg cgggctgtga gttcaaggcc
      901 agactgggac aatgagagat ttgagatcag actctgtttt ttgttttttt tttttttttc
      961 tttttttcgg aactggggac cgaacccagg gccttgcgct gagctaaatc cccaaccccc
     1021 agactctgtt tttaagagaa agatggagag gaaggaaaga cagctggctg cagaacacgt
     1081 ggcaacttga gagagaaacc cttgttctca gatcatagct ggacttggat acgtcatttg
     1141 tgacagttca agaattaaaa aatgggatct gttgttacaa gctattggga acaataaagt
     1201 ggctgtgatt gcataatact gtggtggttg tcacgatggc tatgggaata agtagggact
     1261 tggtctgggc tagtagcggt tttcaggaag cgccaataaa cccattccta gaacctgctt
     1321 tgtactggat tgtctttgga ggcactgtgg tctgggacag tggctcttgc ctgcatagta
     1381 gaaagagttt taaaaagtgc tgaagccatg gtctccctac tcagagattc aactttcatt
     1441 agtctgctgt atttcctgga catgagaatt gattaacgct ccacatgcat tctgcgtgca
     1501 gccgcagcta agagctttgt ttgcaagtgg aaaggaggcc tgggagccct ggcccaccag
     1561 tgacttactg agggtgttcg gacaagtcgc ccagctcata agcaccgtgt tttctcagtc
     1621 gcttgcatgc atctgtctgt ctgtctatct gtttattact ataaaattcc taacagaggt
     1681 ctagtctgta catccaagtt gtaaatttgt ttctgtattc ctttccactc tgtatctcat
     1741 attctgtttc ctctagtgac attgaaaagt tctagaagtg ctgtgtactt tttagaaaga
     1801 aaaaatagat ttttaaaatt ta
//
