LOCUS       NM_001025638            1953 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus syntaxin 11 (Stx11), mRNA.
ACCESSION   NM_001025638 XM_218092
VERSION     NM_001025638.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1953)
  AUTHORS   Kogl,T., Muller,J., Jessen,B., Schmitt-Graeff,A., Janka,G., Ehl,S.,
            zur Stadt,U. and Aichele,P.
  TITLE     Hemophagocytic lymphohistiocytosis in syntaxin-11-deficient mice:
            T-cell exhaustion limits fatal disease
  JOURNAL   Blood 121 (4), 604-613 (2013)
   PUBMED   23190531
REFERENCE   2  (bases 1 to 1953)
  AUTHORS   D'Orlando,O., Zhao,F., Kasper,B., Orinska,Z., Muller,J.,
            Hermans-Borgmeyer,I., Griffiths,G.M., Zur Stadt,U. and
            Bulfone-Paus,S.
  TITLE     Syntaxin 11 is required for NK and CD8 T-cell cytotoxicity and
            neutrophil degranulation
  JOURNAL   Eur J Immunol 43 (1), 194-208 (2013)
   PUBMED   23042080
REFERENCE   3  (bases 1 to 1953)
  AUTHORS   Trost,M., English,L., Lemieux,S., Courcelles,M., Desjardins,M. and
            Thibault,P.
  TITLE     The phagosomal proteome in interferon-gamma-activated macrophages
  JOURNAL   Immunity 30 (1), 143-154 (2009)
   PUBMED   19144319
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Nov 27, 2020 this sequence version replaced NM_001025638.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CK478859.1, SRR26643284.40.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN16676787 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-69                JAXUCZ010000001.1  9140151-9140219     c
            70-1953             JAXUCZ010000001.1  9113594-9115477     c
FEATURES             Location/Qualifiers
     source          1..1953
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1p13"
     gene            1..1953
                     /gene="Stx11"
                     /note="syntaxin 11"
                     /db_xref="GeneID:292483"
                     /db_xref="RGD:1304744"
     exon            1..69
                     /gene="Stx11"
                     /inference="alignment:Splign:2.1.0"
     exon            70..1953
                     /gene="Stx11"
                     /inference="alignment:Splign:2.1.0"
     CDS             75..938
                     /gene="Stx11"
                     /codon_start=1
                     /product="syntaxin-11"
                     /protein_id="NP_001020809.2"
                     /db_xref="GeneID:292483"
                     /db_xref="RGD:1304744"
                     /translation="MKDRLAELQELSRSYDQQFPDGDDDFDAPQEDIVFETDHILESL
                     YRVIQDIQDENQLLLIDVRRLGRQNVRFLTSMRRLSSIKRDTNSIAKAIKTRGEGIHQ
                     KLRSMKEMSEQAEAQHGAHSAVARISHAQYSALARAFQQAMYEYNQAEMKQRDNCKIR
                     IQRQLEIMGKDVSGEQIEDMFEQGKWDVFSENLLADVKGARAALNEIESRHRELLRLE
                     GRIRDVHELFLQMAVLVEKQADTLNVIELNVQKTLDYTGEAKAQVRKAVQYKKKNPCR
                     TICCFCCPCVN"
ORIGIN      
        1 cctccgggac gcgagcattg cgtgtcctcc cggcgtccgg acgctggatc agcgccccgc
       61 cggatcacgg caaaatgaag gatcggcttg cagagcttca ggaattgtcc aggagctatg
      121 accagcaatt cccagatggg gacgatgact ttgacgctcc ccaggaggac atcgtgttcg
      181 agaccgacca catcctggag tccttgtacc gggtcatcca ggacatccag gatgaaaacc
      241 aactgcttct gatcgacgtg aggcgcctgg ggaggcagaa cgttcgcttc ctcacctcca
      301 tgaggcgcct cagtagcatt aagcgagaca ccaactccat cgccaaggcc atcaagaccc
      361 ggggcgaggg catccaccag aagctgcgct ccatgaagga gatgagcgaa caggcagagg
      421 ctcagcacgg cgcgcactcg gcggtggcac gcatctcaca cgcacagtac agcgcgctgg
      481 cccgcgcctt ccagcaggcc atgtatgagt ataaccaggc cgagatgaaa caacgcgaca
      541 actgcaagat ccgcatccag cggcagctgg agatcatggg caaagacgtg tcgggcgagc
      601 agatcgagga catgttcgag cagggcaagt gggatgtatt ctccgagaac ctgctggcgg
      661 acgtgaaggg cgcgcgggcg gcgctcaacg agatcgagag ccgccaccgc gagctcctgc
      721 gcctggaggg tcgcattcgc gacgtgcatg agctcttcct gcagatggca gtgctggtgg
      781 agaagcaggc ggacacgctg aacgtcatcg agctcaacgt gcagaagacc ctcgactaca
      841 ccggcgaggc caaggcgcag gtgcgcaagg cggtgcagta caagaagaag aacccctgca
      901 ggaccatctg ctgcttctgc tgcccctgcg tcaactagca gctggcttgg gcctccactg
      961 cacatgcctg gacatgggaa agtgcacatg ccagccaaag gcatcctgca ctaggctgag
     1021 ggagagggcc ccagtgcctt gcagaattcg gagcatagta gggggttgga atgcaagata
     1081 tggaacccgg cacctgccta caaggttgct agcgtccaat ggctccttag tgtaggcaga
     1141 tttccactgg tgttgtgtga tgtcattata aagtacatag cactcagcat cacggggagg
     1201 aactaatgtc actgccaaga ccagtgtctt gaagtctaaa ggtaaaaaag ccaagcgagc
     1261 atatgttaat agtaggagca cattatcaaa aattgccttc gtttatcccc tctggaaagt
     1321 tccttggtgc tattcgattt tgagtgacat tcacttcagt attccttagt tctgttgaat
     1381 ttcgagtaac tttgaccttg ggtgaactgg gcgccaatta cttctgattg gcggtctatt
     1441 tatgttgtgc gggtgctgtg ggaacacctt cccggggctg gcttctcctc tgcatcaacc
     1501 tgcaccggac actggctcct tgtttctctc accttttata gtgtgtagca gtttatatat
     1561 gaatattttt caagcaccca atattgaaca aaacactcaa gttgaacttt gtactggtca
     1621 cagtttatgg gttttttttt tttcccacag ataacattta tttaaaattt atcttcgtac
     1681 ttcattccgt acggatatgt gtgtaaatgt aaactaatct tcccttgcac gtgtacatga
     1741 atggccaatt ggattgactt tgcttttgga gattctgtat ataaacaaga gcggtttttt
     1801 tgtttgtttt tgttttgttt tttggtgcgt gtcagtgtta gcttgatggt ttgatggtcc
     1861 cgagtgtatt tcattcctgt ctgcacagtc cagtttaggt ctaactttat tctgaacatc
     1921 tgtgtactgt cattaataaa gacaagggag gaa
//
