LOCUS       XM_001067525            6803 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus stum, mechanosensory transduction
            mediator homolog (Stum), transcript variant X1, mRNA.
ACCESSION   XM_001067525
VERSION     XM_001067525.6
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051348.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_001067525.5.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6803
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6803
                     /gene="Stum"
                     /note="stum, mechanosensory transduction mediator homolog;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 17 ESTs, 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 52 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:689499"
                     /db_xref="RGD:1592263"
     CDS             204..629
                     /gene="Stum"
                     /codon_start=1
                     /product="protein stum homolog isoform X1"
                     /protein_id="XP_001067525.1"
                     /db_xref="GeneID:689499"
                     /db_xref="RGD:1592263"
                     /translation="MEPLHKDAETAAAAAAVAAADPRGASSSSGVVVQVREKKGPLRA
                     AIPYMPFPVAVICLFLNTFVPGLGTFVSAFTVLCGARTDLPDRHVCCVFWLNIAAALI
                     QVLTAIVMVGWIMSIFWGMDMVILAISQGYKDQAIPQQL"
ORIGIN      
        1 agtgtcacgc tgcccctccc gccctccgcc cggagtgggg gcgtggagcg cgggagggcg
       61 ggcttctccg ccagcctcac agcacccgga gcgcactggc ctcctgagaa gggcgcattg
      121 cgcgcagccc ggagcccgca gccggccgtc gtctgccctg gtgccctggg cggctgccgg
      181 gttcctggag agcgcgtcca gccatggagc ctttgcacaa agacgctgag actgcggcgg
      241 cggcggcggc ggtggcagcg gcagatcccc ggggggcatc gtcgtccagt ggggtggtcg
      301 tgcaggttcg cgagaagaag ggacccctgc gtgccgccat cccctacatg cccttcccgg
      361 tggctgtcat ctgtcttttc ctcaacactt tcgtgccggg attgggaaca ttcgtctcgg
      421 ccttcactgt gctgtgtggg gcacgcaccg acctcccgga caggcacgtg tgctgcgtct
      481 tctggctgaa tatcgctgcg gccctcattc aggtgctcac ggccatcgtc atggtgggct
      541 ggatcatgag catcttctgg ggcatggata tggtcatcct tgccatctcc caagggtaca
      601 aggatcaggc tatcccacaa cagctgtgag cttacaggac ctgccaggaa agtccagggt
      661 cccgtgaggg ctgcgccagg aggctccggg cacaaggacc ttcacatatt ctcttctgcc
      721 atttctcaga ttggagtaga gagggagtac ttacaaaata ttatttattt tggaaaacac
      781 acctgctttt cttagcaggc tctgaggctg tcttctctct ccctgtccca gagtgcatgg
      841 gaggaacagg ccaagagcat cgggactggg ttagaggcgt gatagcgacc cggtgcaagg
      901 gatgctgggt atgcttattc acctgcactc tgaacaggca cccggacctg ccaggctggg
      961 ctgctgtagg tcccgtgcag gtgaccagtc actctcccag gcgtcgggac ttcatggaac
     1021 acttacttcc tctgtgtcct cacgccctgc tcaaccatgt ggttccctgt gtttgctctg
     1081 tggtctccca gggagtgtat cagagtcggg gttgccagtg tggaaaggcc aggtgatagc
     1141 ccagtgtgga aaagtccttg ggtggccctc tcccccatga aatctgttga taccccagcg
     1201 tctgagttgc tgggtgtgcg tgtgactttg tgacctgcct tgggggtggc acccactcca
     1261 cttctggggt gtcactgccc gtgttcggat gtttatgtgc aaaatgacca gactgagtta
     1321 tgaatggctg cagaccagca gccttcttgg aaacatttat tactgtgtct ggtccctcgc
     1381 cgtctctgga tcccctctcc ctttttttcc tgacatccac gtgtttctga atccagatgg
     1441 tttgttttga ggaagaggat ggtatccatt cattagtgtt tcctgacttc ccagcggagt
     1501 ctgggcttcc cccacccccc gacgccacac atgtggatat caccagagaa ccctgtgaac
     1561 ggtcagatgt gttgagactc aagtcctgag ggacattgga gcctggactg cacttgaact
     1621 gtgagacctg cagagtgaca tcatgaagtt ggggactttg acctgaaatt catacttgct
     1681 gcaagaagac agttgtcagc atagcagtac cccctttaag cagcgaacct gggactgatc
     1741 agtacagagc ttgatcctta ctaggcagag aaagcaacag aaagtgtgaa ggcacccatc
     1801 tgaaattaag agaaaggcgg acccaaactg atggcagtgg ggtggctaat tatatctctc
     1861 tccattctca ttctaacgta ggaagcgcta acatgtggga caggcccagg gctcagttcc
     1921 cggtcacact ggccttgagc caccagtgag tccctcttgg agaatctctt atcatctgcc
     1981 tgaggctctg tcgaagtgtg gaaaggagcc gtccactttc tgccttggtg gagggaggct
     2041 cttgaaaagc agctcccgtt tcactggagt tccggcctcc tgccagtctt cttaattgga
     2101 atccttggaa gctggccccc aactggacag ctcctgacat catgaagaga tattgtagtc
     2161 ccatgaagta ctcactcctg gccctgactc tgggctggct tgcctctcct atcctgtgtc
     2221 tacccatgag tttcttccat ggctgtgtgg gatccagttg tacctttgga acgcttgcca
     2281 ggggcccatt tcttcctgtg tttctttctg ttgcttctgt cggtttgcag tccctgtctt
     2341 ggggtatgag accaggcttg gttctctcta gagcagatca ctgctctcaa ggaggctaca
     2401 tcaggtagca aagctgtacc agaaagggga aggagggtca atgtgccctc ccatgctgcc
     2461 agcccacagt cctttatccc acagagccag tgatgacagg ccttagcaag ggcagccccc
     2521 acagcgaggg agaagtctat ttctctggct agggctgggg gtggctactg ggggagttga
     2581 aaggagatag caatttgtat tgcttgttta gtgacatgag ccagactcga gtgggacttt
     2641 cctgagtgac aagtgtcacc atgagttcca gtgtgggatg gcttaataca ggggtttgtg
     2701 agcttggaaa agctatctcc ttagcacccc ctcactccag gtggctgatg tgggtagatt
     2761 ttagggggcc ctagaatagt gagtccgagg gttgctacta gttccaagca gcagccccca
     2821 ggtaagactt gattagcgta atcattctca gtcgatggac agtggctaat tcactctaca
     2881 taatccaaga aggccactgg ataggtgacc agagttcatt tactaaaaca ccagatattt
     2941 agaaagcagt gctgtgaacc cagaaagtgc ttggtggctc caggactctt tagtgacaaa
     3001 actgcctggg tagcagtttt gttggctgtg gtccaacctt gggaaataat tcagaagaat
     3061 gttccctggc tatgagtgcc aggggcagat ttcacaggca cacagtgagc gtccacagag
     3121 actgtgacac tgtcaggacc taatgtggca ttgtaaccag agtggccctt ctttccacca
     3181 aaccaggacc ctgggggttg gggatttagc tcagtggtag agcgcttgcc taggaagcgc
     3241 aaggccctgg gttcggtccc cagctccgaa aaaaagaacc aaaaaaaaaa aaaacaaaaa
     3301 acaaaaaaca aaaaacaaaa aaacaacaaa acaggaccct ggagcaagag tgaggactag
     3361 gtagcctagt gccctagctc catttctgtt gccatgataa aaaaaaagaa acgtgcaaca
     3421 ggagaaagga aagtttgatt ttgtggctta taatccaggt tatatacagt ccatcatggc
     3481 ggaggagcca tgacggtagg aaccggaagc acctacgtca ccacatccat agtaaacagc
     3541 cgagagaagc aaatgcatcc atactcctcc cgccccgtcc ccatcagttt catgtaaact
     3601 tacaaagtcc aagacccagc tcataaaccg gcgccactca cgttcagggt ggatcacctc
     3661 acttccgtta acaaataaga taatcctcca cagaggcgcc cacaggtcaa tctgatctaa
     3721 ataattcctc tttaagactt ccccggtgat tttaggtttg gttaagctaa aactattcaa
     3781 cagtgtgtag tgtattgtgg ggaccactga ggaccccaga cggtggccag gaagcggcta
     3841 tggaactacc caccctccac cctcagactg ccacaattgc tgctcttgcc tgcctccagg
     3901 gccccagccc cagcgacccg ccccacagtg ggcgtggccc aggtgctgct ctgctcagtt
     3961 catctcctac cattcagtga gcaacctgtg gggagttttt gttaagcttt cacaaggaga
     4021 ccagaggctt ctccccaaga cacacctctc agaagtcaca ggggtgggat attctccatc
     4081 acccctcctg catccttgag ctcatctgcc ctcaaagcca tacccctagg cttctgcaag
     4141 tccctgatgg agagtggaag cagatggcag ctccagacag agttggtgct cagagctgct
     4201 tggctcctgg ggtccaggtc ctgcattccc tcacaggact gaggctgcac ctatggttga
     4261 taaaatcatg gggtgtagga tgctgggggc tacagcgggg agaactcagc tataggagac
     4321 gtaggaagta aatggatcac atggttagca tgtgtcccgg acagaaaagg atcaagatat
     4381 gcaaaagaaa agccatccac acatcacaca ccaggtttaa ggctccagtg ggctgaaatc
     4441 tcaagaccag aaaaatcccc ccgaaggccc aagggtcctg aagcaggaaa gtaagattga
     4501 aagggtgttc ctctgacctt aagaattaaa acgcaaggcc ttagtgatgg tgaatgacct
     4561 gcatgaagaa agctggggct gtgtgctctg gggacagagg gctggggcgg agaaaggcag
     4621 tgggtgttct gttcgtgaga atggctccca gcaggtcttt ctcacacctt ctggatcctg
     4681 ttgaagcccc gttgtgggaa tcagagagac ccccaaatta attagtcaga gctcccagag
     4741 gttgatcttt gtgattcaag agggcttggg gcttagagaa ctaactggcc actgcgtctc
     4801 cttactcccg ggcagaagtg cgcccgatac agagcaaggt ttccccctag tggaagcagg
     4861 gagtcaggac accatctgcc agcctagggg tggggttcgc tccatgcgct gtgagggagg
     4921 ttcggcagtt agcaagtgtt ccttcagtgc taaactgctc aggtcctgag ctcagacgaa
     4981 agatgccctc caggtcacat ccctacagta tccagcctcc accagtgaca gcaagctcgg
     5041 ggagaccttt tcttcaacga ggagctctat ctccttccag agagttctgt gcccaggttg
     5101 taggggacat gaggtcatct tggacagtgg cagtgaccta gtactatcgg gaagaggtca
     5161 tctaagtgat gggcaaagag gctcagagtc tatcttcttc atcttccttc ctggtagctt
     5221 ttgagagctt ctgaatgttc acggaggcaa tgtatgcttt caatcccatg atgcaccagg
     5281 acaaaatgaa tcccaacctg agtgagtggt cctgtgtgcc ctacacgggc cagggtgact
     5341 atagtctcgt ttcagcaatg tccctccagc tgtttgtcct gcatctaacc atccacagta
     5401 tagaaataaa accaatctgt ccccaatcct accaaagcca agggtctcca aattccaggc
     5461 ccagtcaggc atacaaggta cgctggaccg catgacttcc aaagctggcg gccacaaagc
     5521 tgggagagcc cagactcttt ctggtaaaac aaacactggt ccagtatgcc acaacccccc
     5581 acaggagact aaagaaatgg ttctaccaaa gttcgggacc cagtgagttt ataaagcatg
     5641 gcagactctt ggtaagctac gtcgctgaaa agccccaccc cagcatgggt gacaactcaa
     5701 agaagtcaca aaactgttgt cctcacccca gtcagtcatc cctccgcaac tctgtccact
     5761 gtagccactg gttgccctct ctccaggggt ccgtgggatc ggaatcccca ccgcaccctt
     5821 tccagatcta ctggaatcta cccccaggct ccagagtggt cttttgtgga gtggggaagg
     5881 agagggaagt gacctcttcc tgaagctttt ctgtgctgct agcgttattt ttacttctga
     5941 gcttatacac tgcctgcccc agcccaggag ccagcaagga gtagaagagg aaagttttaa
     6001 gcagacacaa gcgatggtgg ggtttgtgag gattcagcgg gctcctgtgg aatggtagct
     6061 ggcccttgca ggctcagttg cacggggggg ggggggggag ctcgctggat tcatcactga
     6121 gttatgagca ggcgttgtgt tgtgaattac tgtttaggtg ttgccattgg cttttctctg
     6181 ttaaattacc tgctgtacac ttccaagttc tctgacgata tccagggctt tcttttctca
     6241 ctcctgctca cagggacccc cacgtgccca tccagccacg gggtgggggt ggggcattgc
     6301 caggccattc caaagattgc aagagttctt ggagacgact tggaatatct cagccccagg
     6361 gaagattcta gactttcctg gctgaaactg aagcacggga cccaggtttg acttttgctt
     6421 aactttccca gtgtccacag gcttgagccc ccagccttgg ctcggggtcc acagagcccc
     6481 acagggtcca cagggccctg caggagcaga gcagggctcc tgtgtctcca gctttctgcc
     6541 agctttaaag tcgttccttg cagcaacgct gctgtacatg tggtggggaa caccacccac
     6601 atcaaagccc atgtacatat ctccgtgtac atgtgtgcat acacatgtgc ccctgttata
     6661 aagtagcaac gcatggtgtt tctttggcat tccaatttgg ttttattttt taacccttga
     6721 aaatatggtt ttggcgatct tttcttcttc tcttccctct tttctattta ataaacaccc
     6781 atgtgaccat gtggcttctc gga
//
