LOCUS       XM_039109010            4863 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus striatin interacting protein 2
            (Strip2), transcript variant X1, mRNA.
ACCESSION   XM_039109010
VERSION     XM_039109010.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 3, 2024 this sequence was replaced by
            NM_001427848.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4863
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4863
                     /gene="Strip2"
                     /note="striatin interacting protein 2; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 18 ESTs, 9 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     137 samples with support for all annotated introns"
                     /db_xref="GeneID:500066"
                     /db_xref="RGD:1588437"
     CDS             96..2630
                     /gene="Strip2"
                     /codon_start=1
                     /product="striatin-interacting protein 2 isoform X1"
                     /protein_id="XP_038964938.1"
                     /db_xref="GeneID:500066"
                     /db_xref="RGD:1588437"
                     /translation="MDDPAAPGPSGSPANDNGNGNGNGNGNGNGGKGKPAVPKGREAF
                     RNQRRESEGSVDCPTLEFEYGDADGHAAELSELYSYTESLEFTTNRKCFEEDFKTQVQ
                     DTKEWLELEEDAQKTYVMGLLDRLEVVSREQRLKVARAVLYLAQGTFGECDSEVDVLH
                     WSRYNCFLLYRMGTFSAFLELLHMEIDNSQASSSALRKPAVSIADSTELRVLLSVMYL
                     MVENIRLEREIDPCGWRTARETFRTELSFSTHNEEPFALLLFSMVTKFCSGLAPHFPI
                     KKVLLLLWKVVMFTLGGFEHLQALKIQKRAELGLPPLAEDSIQVVKSMRAASPPSYTL
                     DLGESQLAPPPSKLRGRRGSRRQLLTKQDSLDIYNERDLFKTEEPATEEEEESASDGE
                     RTLDGELDLLEQDPLVPPPPSQTPLSADRVSFPKGLPWAPKVRQKDIEHFLEMSRNKF
                     IGFTLGQDTDTLVGLPRPIHESVKTLKQHKYISIADVQIKNEEELEKCPMSLGEEVIP
                     ETPSEILYQGMLYSLPQYMIALLKILLAAAPTSKAKTDSINILADVLPEEMPATVLQS
                     MKLGIDVNRHKEIIVKSISALLLLLLKHFKLNHIYQFEYVAQHLVFANCIPLILKFFN
                     QNILSYITAKNSISVLDYPCCTIQDLPELTTESLEAGDNSQFCWRNLFSCINLLRLLN
                     KLTKWKHSRTMMLVVFKSAPILKRALKVKQAMLQLYVLKLLKIQTKYLGRQWRKSNMK
                     TMSAIYQKVRHRMNDDWAYGNDIDARPWDFQAEECTLRANIEAFNSRRYDKPQDSEFS
                     PVDNCLQSVLGQRLDLPEDFHYSYELWLEREVFSQPICWEELLQNH"
ORIGIN      
        1 ccgggcgcgc gctgtggcgg ggtcgcccgg ggcagagatc ttgaagctgc ggtaggcagc
       61 cgctgaggcg aaccgctaaa gggaaccttc ctagtatgga cgaccccgcg gcgccggggc
      121 cctccggctc tccggctaat gacaacggca atggcaacgg caacggcaac ggcaacggca
      181 acggcggcaa agggaaaccg gctgtaccca agggccggga agcgttccgc aaccagcggc
      241 gggagtcgga gggctctgtg gactgcccta ctctcgagtt tgaatatgga gatgcagatg
      301 gacatgcagc agaattgtca gaattatata gctacacaga gagcctggaa tttaccacta
      361 acaggaagtg ctttgaagaa gatttcaaga ctcaagtgca agacactaag gaatggctgg
      421 agttggaaga agatgcccaa aagacctacg tgatgggact tctagaccga ctggaggtgg
      481 tcagtaggga acaacggctt aaggtggccc gtgctgttct ctatctagcc caaggcactt
      541 ttggggaatg cgattctgag gttgatgtgc tacactggtc cagatacaat tgcttcctgc
      601 tctatcggat ggggactttc tcagccttcc tggagctact ccacatggaa atcgacaaca
      661 gccaggcctc tagtagtgcc cttcggaaac cagccgtctc cattgctgac agcactgagc
      721 tcagggtact gctgagtgtc atgtacctaa tggtggaaaa tatccgcttg gagcgagaaa
      781 tagacccctg tgggtggagg acagcccgag agaccttccg aaccgaactg agtttctcca
      841 cacataatga agagcctttt gcactcctgc tgttttccat ggttaccaaa ttctgcagtg
      901 gcctggcccc ccactttcca ataaagaagg ttctgcttct cctctggaag gtggtcatgt
      961 ttacccttgg tggatttgag cacctgcagg ctctcaaaat acagaagcgt gcagagttgg
     1021 gcctgcctcc actagctgag gacagtatcc aggtcgtaaa gagcatgcgt gctgcctctc
     1081 cgccttctta cactcttgat ctaggcgagt ctcagctggc cccgccaccc tccaaactgc
     1141 ggggccgccg tggctctcga aggcaactcc ttaccaagca agacagcctg gacatctaca
     1201 atgaaaggga cctcttcaag accgaggagc cggccacaga ggaggaggaa gaatctgcaa
     1261 gtgatggaga acgaaccttg gatggagagt tagaccttct agaacaggat cctctggtac
     1321 cacctccacc ctcgcagaca cctctctctg ctgaccgggt gtcctttccc aagggcctgc
     1381 cctgggcccc aaaggttaga cagaaggaca ttgaacactt cttggagatg agcagaaaca
     1441 agttcattgg attcactctg gggcaggaca cagatacctt ggttggatta cctcgaccca
     1501 tccacgagag tgtgaagact ctaaagcagc acaagtacat ctccatcgca gatgtacaga
     1561 taaagaatga agaggagctg gagaaatgcc ccatgtcctt gggagaagag gtgataccag
     1621 aaacaccgag tgaaatcctc taccagggca tgctgtacag cctcccccag tacatgattg
     1681 ctctgcttaa gattctgctg gctgcagccc ccacctccaa ggctaagaca gactctatca
     1741 atatcctggc agatgtcctc cctgaagaga tgcctgcgac tgttctccag agcatgaagc
     1801 taggcattga tgtgaacaga cacaaggaga tcattgtgaa gagtatctct gccctgctcc
     1861 ttctacttct caaacacttc aaactcaacc atatctacca gtttgaatat gtggcacagc
     1921 atttagtgtt tgccaactgc atccccttga tcctgaagtt cttcaatcaa aacatcctgt
     1981 cctatatcac tgccaaaaac agcatttcag tgctggatta cccgtgctgt accatccagg
     2041 atttgccaga gcttactacc gagagtctgg aagccggaga caacagccag ttctgctgga
     2101 ggaacctctt ttcctgcatc aacctcctga ggctgctcaa taagctgacc aagtggaagc
     2161 actccaggac catgatgttg gtggtgttta agtcagctcc aatcttaaag cgagctctca
     2221 aagtcaaaca ggccatgcta caactttatg tcctgaagct actaaagata caaaccaagt
     2281 accttgggcg ccaatggaga aaaagcaata tgaagaccat gtcagccatt taccagaaag
     2341 tgcgccaccg tatgaatgat gactgggctt atgggaatga catcgatgcc agaccatggg
     2401 acttccaagc tgaagaatgt accctgaggg ccaacatcga ggcctttaac agccgccgat
     2461 atgataaacc gcaggactca gaattttcac ctgtggataa ctgcctgcag agtgtgctgg
     2521 ggcagaggtt ggatctgcct gaagatttcc attactccta tgagctctgg ctggagagag
     2581 aggtgttttc acagcccatc tgttgggagg agctgctcca gaatcactaa tggaggttgg
     2641 atccaggaac ccattcagcc ttctccgtga accccaggag tgtgtgtcca ggggtgttcc
     2701 agcctggcat gcagcagaga cacacagcat aattcagggc tatcctgggt gccattaggc
     2761 ttgaaggtgg ttgcaagact gggtgggatc ctgagtcaaa gcaaatggac caacttgtcc
     2821 tcggctcagc taggtaccta gatggccttc acatctcctg gtggatcagt cctggacaga
     2881 ctttgaaacc tgctttaatc ttgccaagaa ctaggccagc cttttgttac tgtggctggc
     2941 tttgttagcc acagtagtga agggaagctc gttacagcat ttggcccatg acgttcatct
     3001 caagcagggg aatagataca gccgtaaaat gagatttttc gtcttgcccg ccctaaatgc
     3061 ctaggacttg tcatttagca aagccaactt tagactgtat ttcacattta aaaagttggt
     3121 gctcacctct ttataaaata atcactgatt ctaaggtgat ttgagagcac tgtatcttta
     3181 gaaaggatga ctgtctccaa aacgctgcat gttacagaac agtgtattgt gtaggctttt
     3241 tcccttaaga gactggtgtt ccatgtagaa actatttcat gtgtattctg tatagtacat
     3301 tgaatacttt gtcatttgga aagaaccaca actagtataa ccttctctaa gaatgtcttg
     3361 ggtttttcag actatttcag tttttaaaca acagagtaca ctgcagaaaa ttactttcta
     3421 atataacccc agatcttcac ctgagtaagg agaggagaga gacaggatct ggctgtgtag
     3481 ccctgactag gccagaccgt actgtgtagc catgctggcc ttgaccttgc ggtgatcctc
     3541 cttcctctgc ctgccagtgt cagaggcatg ggccgcggcc tccagcaaat ccatcttaaa
     3601 tgattgcagg aggttttatt tactgagatt tgtccatttg cactgagttg tttatgaaaa
     3661 gcaacagcat cgtttatatt ttctcttctg tgttcattgc ttctgacctt tcctttgtct
     3721 ttctttgaac tgctagcagt ttcaatatgg tttgtactgg acgcatcaca catttcacag
     3781 gggattctct actcctccta catagagaaa tcacattttc tcttctgctt ttcaatttaa
     3841 cgtttctttg aacgttttta ttttaaaggt cttcccactg cccagacact aatgaatctt
     3901 tttatgatga cacaaagaca ctttattcct agagagctgg tccaaactgg ctcatctact
     3961 cttccctttg tcaagcacag tctcatttga ggtcactata aaggccaaca ttatccaaag
     4021 cagcgatcag tacctctgtg cgtcgggtag cagggtttct ttcctactgt ggaaaatgac
     4081 agagaatgtt aagtatgcaa cagatgaaat gtcttaaagt aatttgcaaa ccgtatcaaa
     4141 gcacggcaag cctcatttca aacagtttac tgaacatagc atcaggcaat tttattcatc
     4201 tagggtcagg ctactatgat tttaatattt gcataaaaag gtaattttcc tggaaaaagc
     4261 atcatcacca gtctacttta aagttatatc ctattcaatt ctataaagaa aaaaacaagt
     4321 tgccttttaa aaaagacaca taaatgcttt ctgaggcaca gaagtatact aaggtttaat
     4381 atgttgtgtt ttattattta taactcttaa gattaattct tttccttttt tttttttttt
     4441 ttcagagctg gggaccaaat ccagggcctt gcgcttgcta ggcaagcgct ctaccactga
     4501 gctaaatccc cagccccaag attaattctt aatgcagatg gagaaactat tgcaccttgc
     4561 aaaaaagaat ggttaatttc aaatcacatc attttccccc aaaagttgct gtggctaact
     4621 ttctggtatc aacagctagc cccacgtcta agataactag ggtagatctc ccaatttgag
     4681 agctggcctg tgtggttagg aacagcttta acccgtaatg gagattccag ttcctacata
     4741 gaggcatgcc atctgtatga tttataatac aaggacttta tctgcgacca tctcagtgat
     4801 gtttgtgttg ataatattat tcatctcacc aaacacttta ataaaaagaa agccctgaaa
     4861 tta
//
