LOCUS       NM_001399218            3208 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus striatin interacting protein 1 (Strip1), mRNA.
ACCESSION   NM_001399218 XM_342311
VERSION     NM_001399218.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3208)
  AUTHORS   Lant,B., Yu,B., Goudreault,M., Holmyard,D., Knight,J.D., Xu,P.,
            Zhao,L., Chin,K., Wallace,E., Zhen,M., Gingras,A.C. and Derry,W.B.
  TITLE     CCM-3/STRIPAK promotes seamless tube extension through endocytic
            recycling
  JOURNAL   Nat Commun 6, 6449 (2015)
   PUBMED   25743393
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3208)
  AUTHORS   Bai,S.W., Herrera-Abreu,M.T., Rohn,J.L., Racine,V., Tajadura,V.,
            Suryavanshi,N., Bechtel,S., Wiemann,S., Baum,B. and Ridley,A.J.
  TITLE     Identification and characterization of a set of conserved and new
            regulators of cytoskeletal organization, cell morphology and
            migration
  JOURNAL   BMC Biol 9, 54 (2011)
   PUBMED   21834987
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 3208)
  AUTHORS   Gonzales,P.A., Pisitkun,T., Hoffert,J.D., Tchapyjnikov,D.,
            Star,R.A., Kleta,R., Wang,N.S. and Knepper,M.A.
  TITLE     Large-scale proteomics and phosphoproteomics of urinary exosomes
  JOURNAL   J Am Soc Nephrol 20 (2), 363-379 (2009)
   PUBMED   19056867
REFERENCE   4  (bases 1 to 3208)
  AUTHORS   Beausoleil,S.A., Jedrychowski,M., Schwartz,D., Elias,J.E.,
            Villen,J., Li,J., Cohn,M.A., Cantley,L.C. and Gygi,S.P.
  TITLE     Large-scale characterization of HeLa cell nuclear phosphoproteins
  JOURNAL   Proc Natl Acad Sci U S A 101 (33), 12130-12135 (2004)
   PUBMED   15302935
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000002.1.
            
            On Jan 4, 2022 this sequence version replaced XM_342311.9.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643290.9561.1,
                                           SRR26643298.12933.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760389 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-194               JAXUCZ010000002.1  197956322-197956515 c
            195-264             JAXUCZ010000002.1  197952864-197952933 c
            265-339             JAXUCZ010000002.1  197952118-197952192 c
            340-474             JAXUCZ010000002.1  197951679-197951813 c
            475-595             JAXUCZ010000002.1  197951473-197951593 c
            596-664             JAXUCZ010000002.1  197950435-197950503 c
            665-771             JAXUCZ010000002.1  197949329-197949435 c
            772-899             JAXUCZ010000002.1  197949091-197949218 c
            900-1082            JAXUCZ010000002.1  197945965-197946147 c
            1083-1300           JAXUCZ010000002.1  197945398-197945615 c
            1301-1366           JAXUCZ010000002.1  197944174-197944239 c
            1367-1430           JAXUCZ010000002.1  197944005-197944068 c
            1431-1502           JAXUCZ010000002.1  197943078-197943149 c
            1503-1577           JAXUCZ010000002.1  197942514-197942588 c
            1578-1675           JAXUCZ010000002.1  197942248-197942345 c
            1676-1802           JAXUCZ010000002.1  197940977-197941103 c
            1803-1903           JAXUCZ010000002.1  197940681-197940781 c
            1904-1970           JAXUCZ010000002.1  197939939-197940005 c
            1971-2075           JAXUCZ010000002.1  197939372-197939476 c
            2076-2280           JAXUCZ010000002.1  197938655-197938859 c
            2281-3208           JAXUCZ010000002.1  197936569-197937496 c
FEATURES             Location/Qualifiers
     source          1..3208
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q34"
     gene            1..3208
                     /gene="Strip1"
                     /gene_synonym="Fam40a"
                     /note="striatin interacting protein 1"
                     /db_xref="GeneID:362012"
                     /db_xref="RGD:1564249"
     exon            1..194
                     /gene="Strip1"
                     /gene_synonym="Fam40a"
                     /inference="alignment:Splign:2.1.0"
     CDS             15..2528
                     /gene="Strip1"
                     /gene_synonym="Fam40a"
                     /note="protein FAM40A; family with sequence similarity 40,
                     member A"
                     /codon_start=1
                     /product="striatin-interacting protein 1"
                     /protein_id="NP_001386147.1"
                     /db_xref="GeneID:362012"
                     /db_xref="RGD:1564249"
                     /translation="MEPAAAGPGPLIVNNKQPQPPPPPPPATAQPPPGAPRAAGGLLP
                     AGKAREFNRNQRKDSEGYSESPDLEFEYADTDKWAAELAELYSYTEGPEFLMNRKCFE
                     EDFRIHVTDKKWTELDTNQHRTHAMRLLDGLEVTAREKRLKVARAILYVAQGTFGECS
                     SEAEVQFWMRYNIFLLLEVGTFNALVELLNMEIDNSAACSSAVRKPAISLADSTDLRV
                     LLNIMYLIVETVHQDCDGDKAEWRTMRQTFRAELGSPLYNNEPFAIMLFGMVTKFCSG
                     HAPHFPMKKVLLLLWKTVLCTLGGFEELQSMKAEKRTLLGLPPLPEDSIKVIRNMRAA
                     SPPASASDLIEQQQKRGRREHKALIKQDNLDAFNERDPYKADDSREEEEENDDDNSLE
                     GEAFPLERDEVMPPPLQHPPTDRLTCPKGLPWAPKVREKDIEMFLESSRSKFIGYTLG
                     SDTDTVVGLPRPIHESIKTLKQHKYTSIAEVQAQMEEEYLRSPLSGGEEEVEQVPAET
                     LYQGLLPSLPQYMIALLKILLAAAPTSKAKTDSINILADVLPEEMPTTVLQSMKLGVD
                     VNRHKEVIVKAISAVLLLLLKHFKLNHIYQFEYMAQHLVFANCIPLILKFFNQNIMSY
                     ITAKNSISVLDYPHCVVNELPELTAESLEAGDNNQFCWRNLFSCINLLRILNKLTKWK
                     HSRTMMLVVFKSAPILKRALKVKQAMMQLYVLKLLKVQTKYLGRQWRKSNMKTMSAIY
                     QKVRHRLNDDWAYGNDLDARPWDFQAEECALRANIERFNARRYDRTHSNPDFLPVDNC
                     LQSVLGQRVDLPEDFQMNYDLWLEREVFSKPISWEELLQ"
     exon            195..264
                     /gene="Strip1"
                     /gene_synonym="Fam40a"
                     /inference="alignment:Splign:2.1.0"
     exon            265..339
                     /gene="Strip1"
                     /gene_synonym="Fam40a"
                     /inference="alignment:Splign:2.1.0"
     exon            340..474
                     /gene="Strip1"
                     /gene_synonym="Fam40a"
                     /inference="alignment:Splign:2.1.0"
     exon            475..595
                     /gene="Strip1"
                     /gene_synonym="Fam40a"
                     /inference="alignment:Splign:2.1.0"
     exon            596..664
                     /gene="Strip1"
                     /gene_synonym="Fam40a"
                     /inference="alignment:Splign:2.1.0"
     exon            665..771
                     /gene="Strip1"
                     /gene_synonym="Fam40a"
                     /inference="alignment:Splign:2.1.0"
     exon            772..899
                     /gene="Strip1"
                     /gene_synonym="Fam40a"
                     /inference="alignment:Splign:2.1.0"
     exon            900..1082
                     /gene="Strip1"
                     /gene_synonym="Fam40a"
                     /inference="alignment:Splign:2.1.0"
     exon            1083..1300
                     /gene="Strip1"
                     /gene_synonym="Fam40a"
                     /inference="alignment:Splign:2.1.0"
     exon            1301..1366
                     /gene="Strip1"
                     /gene_synonym="Fam40a"
                     /inference="alignment:Splign:2.1.0"
     exon            1367..1430
                     /gene="Strip1"
                     /gene_synonym="Fam40a"
                     /inference="alignment:Splign:2.1.0"
     exon            1431..1502
                     /gene="Strip1"
                     /gene_synonym="Fam40a"
                     /inference="alignment:Splign:2.1.0"
     exon            1503..1577
                     /gene="Strip1"
                     /gene_synonym="Fam40a"
                     /inference="alignment:Splign:2.1.0"
     exon            1578..1675
                     /gene="Strip1"
                     /gene_synonym="Fam40a"
                     /inference="alignment:Splign:2.1.0"
     exon            1676..1802
                     /gene="Strip1"
                     /gene_synonym="Fam40a"
                     /inference="alignment:Splign:2.1.0"
     exon            1803..1903
                     /gene="Strip1"
                     /gene_synonym="Fam40a"
                     /inference="alignment:Splign:2.1.0"
     exon            1904..1970
                     /gene="Strip1"
                     /gene_synonym="Fam40a"
                     /inference="alignment:Splign:2.1.0"
     exon            1971..2075
                     /gene="Strip1"
                     /gene_synonym="Fam40a"
                     /inference="alignment:Splign:2.1.0"
     exon            2076..2280
                     /gene="Strip1"
                     /gene_synonym="Fam40a"
                     /inference="alignment:Splign:2.1.0"
     exon            2281..3208
                     /gene="Strip1"
                     /gene_synonym="Fam40a"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtggagcagc caagatggag ccggcagccg ccggtcccgg ccctctgatt gtgaacaaca
       61 agcaacccca gccgccacct ccgccgccgc cagctaccgc acagcctcct cctggggcgc
      121 cgagggccgc cggaggcctc ctgccggcgg gcaaagcccg cgagttcaac cgcaaccaac
      181 gcaaagactc ggagggctat tctgagtcac cagacctgga gtttgagtat gccgacacag
      241 acaagtgggc tgcagagctc gcagagcttt acagctatac agaaggacca gaattcctga
      301 tgaatcgaaa atgctttgag gaggacttcc ggatccatgt gacagacaag aagtggactg
      361 agctggatac caaccagcac cgtacccatg ccatgaggct tctggatggc ttggaagtca
      421 ctgcccgaga gaagagactc aaggtggccc gagcaattct ctatgttgcc caaggaacct
      481 ttggagagtg cagctccgag gcagaagtgc agttctggat gcgctacaac atctttctgc
      541 tcctggaggt gggcacgttc aatgccttgg tggagcttct gaacatggaa atagataaca
      601 gtgccgcatg cagcagtgcg gtgaggaagc ctgccatctc cctggctgac agcacagacc
      661 tgagggtcct gctgaacatc atgtacctga ttgtggagac tgttcaccag gattgcgatg
      721 gtgacaaggc cgagtggaga acgatgcgac agaccttcag agctgagctg ggttcccctc
      781 tgtacaacaa cgagccattt gccatcatgc tatttgggat ggtgaccaag ttttgcagtg
      841 gccatgcccc ccacttcccc atgaagaaag ttctcttgct gctctggaag actgtattgt
      901 gcacgctggg cggcttcgag gagctgcaga gcatgaaggc tgagaagcgc actctcctgg
      961 gccttccccc cctgcctgag gacagcatca aggtgatccg gaacatgagg gctgcctccc
     1021 caccagcctc tgcctcggac ctgattgagc agcagcagaa gcggggccga cgagagcaca
     1081 aggctctgat aaagcaggac aatctagatg ccttcaatga gcgggatccc tataaggctg
     1141 acgactctcg ggaggaggaa gaggagaatg atgacgacaa cagcctggag ggggaggctt
     1201 ttcccctgga gcgagatgag gtgatgcctc ccccactaca gcaccctccg actgacagac
     1261 tcacctgccc aaaaggactc ccttgggctc ccaaggttag agagaaagac attgagatgt
     1321 tccttgaatc cagccgcagc aagttcatag gctacactct gggaagtgac accgacacag
     1381 tggtggggct gccaaggcca atccacgaaa gcatcaagac actgaaacaa cacaaatata
     1441 catcgattgc agaggtccag gcacagatgg aggaggaata ccttcgctct cctctctcag
     1501 ggggagaaga ggaagttgaa caagttcctg cagaaaccct ctatcaaggc ttgctcccta
     1561 gcctgcctca gtatatgatt gctctcctga agatcctgtt ggctgcagct cccacgtcaa
     1621 aagccaagac agactccatc aacatcttgg cagatgtcct gcctgaggag atgcccacca
     1681 cagtgttgca gagcatgaag ctgggggtgg atgtgaaccg ccacaaagag gtcatcgtta
     1741 aggccatttc tgctgtgctg ctgctgctgc tcaagcactt caagttgaac cacatctacc
     1801 agtttgagta catggcccag cacctggtat ttgccaactg catccctttg atcctgaagt
     1861 tcttcaatca aaacatcatg tcctacatca ctgccaagaa cagcatttct gtcttggatt
     1921 accctcactg cgtggtgaac gagcttccag agctaaccgc agagagtctg gaagctggtg
     1981 acaacaacca gttttgctgg aggaatctct tttcttgcat caatctgctt cggatcttga
     2041 acaagctaac gaagtggaaa cactcaagga ctatgatgct ggtggtgttc aagtcggcgc
     2101 ccatcctgaa gcgggccctg aaggtgaaac aggccatgat gcagctctat gtgctgaagc
     2161 tgctcaaggt gcagaccaag tatttgggac gacagtggcg caagagcaac atgaagacga
     2221 tgtctgccat ctaccagaag gtgcggcacc ggctgaacga cgactgggct tacggcaatg
     2281 atctcgatgc ccggccatgg gacttccaag cagaggagtg tgctctccgt gccaacattg
     2341 aacgcttcaa tgcccggcgc tatgaccgga cccacagcaa ccctgacttc ttgccagtgg
     2401 acaattgcct gcagagcgtc ttgggccaac gggtagatct tcctgaggac ttccagatga
     2461 actatgacct atggctagaa agggaggtct tctctaagcc catttcctgg gaagagctgc
     2521 tgcagtgagg agggatgaaa aagactgtga tctgtctcat acccgaggga ctgtccttgc
     2581 cattgctgca gtgctcctgt tgccctccag gtggcagcac aactccattg agtcctccag
     2641 aaccagtcct gggcccgtga gtgaacccag gttagcctct ggttgattcc cagcatccta
     2701 ctcaggagca gtcatctcca agctgggatc tactcttcct ccacttcccc agtttctacc
     2761 ctcctccctt ggattgactg cgtgaaactc atttcacaag tagccccagg ctgggaaaag
     2821 ctgagaaggg ccttgtgtcc cttctcatcg gcagctgtgt cttgaggcca tgctgactcc
     2881 tgagctgctt tggcacgtca gttggtcaag aaggaggggt ggcatgaggg ccaggaacag
     2941 agtcagcgcc ttggttgtgc tctgggggta tctcgtgtca ttccggtatc ctgctgagtt
     3001 ttgtccagaa gtgatagata ccacagcctc tgcaccctgg ttttggatgt ggtcaaaagt
     3061 ggagtgaggc ttcctgaagc cagaggtgct ggtttcttct tgattgtcat ggcctgtaaa
     3121 tatacaaaac tctgtgtggt ctcatgtcat ggtggggttt ttaatgtgtt tgtgtattct
     3181 gtttacatta aaagaaagca aaactgtc
//
