LOCUS       XM_001080205            6651 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus stereocilin (Strc), mRNA.
ACCESSION   XM_001080205
VERSION     XM_001080205.6
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_001080205.7.
            
            On Jan 21, 2021 this sequence version replaced XM_001080205.5.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6651
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6651
                     /gene="Strc"
                     /note="stereocilin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 3 Proteins, and 96%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:691937"
                     /db_xref="RGD:1593345"
     CDS             1137..6572
                     /gene="Strc"
                     /codon_start=1
                     /product="stereocilin"
                     /protein_id="XP_001080205.2"
                     /db_xref="GeneID:691937"
                     /db_xref="RGD:1593345"
                     /translation="MALSLQPLLLLLLSIPPQEVTLAHVGLQSLDVGLSLLKSFISTL
                     DHTPQRYLSQSRFSAFLANISSSFEFGRMGEGPVGEPPPLQPPALRLHDFLVTLRGSP
                     DWEPMLGLLGDVLALLGQEQTPRDFLVHQAGVLGGLVEALLGALVPGGPPAPTRPPCT
                     RDGPSDCVLAADWLPSLMLLLEGTRWQALVQLQPSVDPTNATDLDGREPVPHFLQGLL
                     GLLTPAGELGSEEALWGGLLRTVGAPLYAAFQEGLLRVTHSLQDEVFSIMGQPEPDAS
                     GQCQGGNLQQLLLWGMRNNISWDARALGFLSGSPPPPPALLHCLSRGVPLPRASQAAA
                     HISPRQRRAISVEALCENHSGPEPPYSISNFSIYLLCQHIKPATPRPPPTTPQPPPTT
                     PPPPPTTPQPPPTTPRPPPTTPQPPPTTPQPPPSTAVICQTAVWYAVSWAPGARGWLQ
                     ACHDQFPDQFLDMICGNLSFSALSGPNRRLVKQLCAGLLPPPTSCPPGLVPVPLTPEI
                     FWGCFLENETLWAERLCVEESLQAVPPRNQAWVQHVCRGPTLDATDFPPCHVGPCGER
                     CPDGGSFLLMVCANDTLYEALVPFWAWLAGQCRISRGGNDTCFLEGMLGPLLPSLPPL
                     GPSPLCLAPGPFLLGMLSQLPRCQSSVPALAHSTRLHYLLRLLTFLLGPGAGGAETQR
                     MLGRALLLSSLPDNCSFWDAFRPEGRRSVLRTVGEYLQREEPTPSGLESTDSLGSGLS
                     KMELLSCFSPVLWDLLQREKSVWALRILVKAYLHMPPDALQQLVLTAETAAAQGFLTL
                     MHRSWAKLRVQPSEEQAMGRLTALLLQRHPHLTSQLFIDMSPLIPFLAVPDLMRFPPS
                     LLANDSVLAAIRDHSSGMKPEQKEALAKRLLAPELFGEVPDWPQELLWAALPLLPYLP
                     LESFLQLSPHQIQALEDIWPVAGLGPGHARHVLRSLVNQSIEDGEEQVRRLGSLACFL
                     SPEELQSLVPLSDPMGPVEQGLLECAANGTLSPEGRVAYELLGVLRSSGGTVLSPREL
                     RVWAPLFPQLGLRFLQELSEPQLRAMLPALQGASVTPAQAVLLFGRLLPRHDLSLEEL
                     CSLHPLLPGLSPQTLQAIPKRVLVGACSCLGPELSRLSACQIAALLQTFRVKDGVKNM
                     GAAGAGTTVCIPGQPTPTTWPDCLLPLLPLKLLQLDTAALLANRRLYRQLPWSEQQAQ
                     FLWKKMQVPTNLTLRSLQALGNLAGGMSCEFLQQISSMVDFLDVVHMLYQLPIGVRES
                     LRACIWAELQRRMAMPEPELTTLGPELSELDTKLLLDLPIQLMDRLSNDSVMLVVELV
                     QGAPEQLLALTPLHQAALAERALKALAPKETPISQEVLETLGPLVGFLGIDSTRRIPL
                     PILLSHLSQLQGFCLGETFATELGWLLLQEPVLGKPELWSRDEIEQAGRLVFTLSAEA
                     ISLIPREALGPETLERLLGKQQSWEQSRVGHLCGKSQLAHKKTALVAGIVHPAVEGLQ
                     DPVPNCADIRGTFPAAWSATQIAEMELSDFEDCLSLFAGDPGLGPEELQAAMGKAKQL
                     WGPPRGFRPEQILQLGRLLIGLGERELQELTLVDWGVLSSLGQIDGWSSVQLRAVVSS
                     FLRQSGRHVSHLDFIYLTALGYTLCGLRPEELQHISSWEFSQAALFLGSLHLPCSEAQ
                     LEALAYLLVLPGGFGPVSNWGPEIFTEIGTIAAGIPDLALSALLRGQIQGLTPLAISV
                     IPAPKFAVVFNPIQLSSLTRGQAAAVTPEQMAYLSPEQRRAVAWAQHEGKEIPEQRGR
                     SSAWGLCDWFHASWALTLTISFFGHLL"
ORIGIN      
        1 tccctcagag accagaagag gaggtcagat cccctgaaat ggaattagag atggttgtgg
       61 gcagccatat gaatgctggg aatcaaaccc ctgtcctctg ggtttgaaag agcaatagtc
      121 actgttctaa actgctgagt catccctcta gacctgcaac aaaagctttt tatgcaaaaa
      181 aagtgaccaa actctggaca gaccagctta tatcgaatga aatctttcta acctatgaat
      241 aggattccat gtgtagagag ttttaacttg agagagaaaa gggaactgca atgtctgtac
      301 ggcctaatca gcaggtgaca gctctctggg gctctttcct cacctgttaa ttgaagagtt
      361 tacctatgtg gtttgtgaag tcctgtctac ttcttaacat tgcaggattc taaggatcta
      421 ttttatgcat gtattcacat tgtctctgtg taggcatggg cacataagtt cagatgtcca
      481 cagaggcagg agacatcaga ttcccctgga gctggagttg caggcacttc tgaaccaccc
      541 aacatgggtg cttgtaatcc aactcaggtc acctacaaaa gcagtgtata cgcttagctg
      601 ctgagccatc tctttctgca ccaatattgt ggaattctag atagtgcatt taaggtaaca
      661 gctctcctct tcctaaatgt tccacccttg aaacatctat cttaatatct tttctctgcc
      721 cacagatggc tgtcagttca ttcctcaaat tcctcaaatc tcctttgcct ctcaaactcc
      781 ttttgtacct tcctgttgga tcacattttt ctgtagaccc ccaaattata tttttagtct
      841 gcctacttct ctctggctcc taactcacgc tatctccttg ggtaatactc tgaaggccct
      901 gagatcccct gtcattggtc cctcacacag aagtacaccc ttctcccaaa gccaaaggat
      961 caggtattca gtggctccgg tgacaagtgt gatgtcaagt tacagatact gtttcccgag
     1021 agaccacact atagtgtcag aggagcccca ggctgcccac aatgccccat cttcacctgg
     1081 ctatcccttc aaggtgggaa tagtcagaac tcacctctag gactgcacct ggaactatgg
     1141 ctctgagcct ccagccctta ctgctgctgc tcttgtcgat cccgccacag gaagtgactt
     1201 tggcccatgt tgggcttcag tctttggatg ttggtctctc ccttctgaag tcattcatct
     1261 ccactctgga ccacactcct cagcgttacc tcagccagtc acggttctct gcattcctgg
     1321 ccaacatttc ttcttccttc gagtttggga ggatggggga gggaccggtg ggagagcccc
     1381 cacctctcca gccccctgca cttcggctcc atgatttcct cgtgacattg agaggtagcc
     1441 cagactggga gccaatgcta gggcttctgg gagatgtgct ggcactcctg ggacaggagc
     1501 agactccccg ggactttttg gtgcaccagg caggcgtact gggtggactt gtagaggcgt
     1561 tgttgggagc tttagttcct ggaggtcccc ctgcccccac aagaccccca tgtacccgtg
     1621 atggcccttc tgactgtgtc ctggctgctg attggctgcc ttctctgatg ttgttattag
     1681 agggtacacg ctggcaggcc ctggtgcagt tgcagcccag tgtggaccca accaatgcta
     1741 cagatcttga tgggagagag ccagtgcctc actttttaca gggtctgctg ggtttgctta
     1801 ccccagcagg agagttgggc tctgaggagg ctctttgggg tggtctgctg cgcacagtgg
     1861 gggcccccct ctatgctgcc ttccaggagg ggctacttcg agtcactcat tctctgcaag
     1921 atgaggtctt ttctattatg ggacagccag agcctgatgc cagtggacaa tgccagggag
     1981 gcaaccttca acaactgctc ttatggggca tgcggaacaa catttcttgg gatgctcgag
     2041 cactgggttt tctatctgga tcaccacctc caccccctgc tctcctgcac tgcctgagta
     2101 gaggtgtgcc tctgcccagg gcttcccagg ctgcagctca catcagccct cggcagcggc
     2161 gagccatttc tgtggaggcc ctctgcgaaa accactcagg cccagaacca ccttacagca
     2221 tttctaactt ctccatctac ttgctttgcc agcacatcaa gcctgccacc ccacggcccc
     2281 ctcctaccac cccacagccc cctccaacca ccccaccacc ccctccaacc accccacagc
     2341 cccctccaac caccccacgg ccccctccta ccaccccaca gccccctcct accaccccac
     2401 aaccccctcc cagcactgct gtcatctgcc agacggctgt atggtacgca gtctcatggg
     2461 caccaggtgc ccgaggttgg ctccaagcct gccatgatca attccctgat caatttctgg
     2521 atatgatctg cggcaacctc tcattttcag ccctgtctgg ccccaatcgt cgcttggtaa
     2581 agcagctctg tgctggcctg ctcccacccc caactagctg cccaccaggc ctagttcctg
     2641 tgcccctcac cccagaaata ttctggggtt gcttcctgga gaatgagaca ctgtgggctg
     2701 aacggttgtg tgtggaggag agtctacagg ctgtgccccc acgaaaccag gcttgggttc
     2761 agcatgtgtg tcggggcccc accttggatg ccactgattt tccaccctgc catgttggac
     2821 cctgtgggga acgctgccca gatgggggca gcttcctgct catggtctgt gccaatgaca
     2881 ctctgtatga ggccttggtt cccttctggg cttggctagc aggccaatgc agaattagtc
     2941 gtggaggaaa tgatacttgt tttctagaag gcatgctggg ccccttgttg ccctctctgc
     3001 cacctctggg accatcccca ctctgcctgg ctcctggtcc ttttctgctt ggcatgttat
     3061 cccagttgcc acgctgtcag tcctccgtgc cagcccttgc ccactccaca cgcctgcatt
     3121 acctgctacg cctactgact ttccttttgg gtccaggggc tgggggtgct gagactcagc
     3181 ggatgttagg tcgagctctg ctgctctcta gcctcccaga caactgttca ttctgggatg
     3241 ccttccgccc agagggccgg agaagtgtac tgaggacagt aggggagtac ctgcagcgag
     3301 aagagccaac cccatcaggc ttagagtcca ccgacagcct cggctctggt ctgagcaaga
     3361 tggagcttct atcctgcttc agtcctgtgc tgtgggacct actccagaga gagaagagcg
     3421 tttgggccct gaggatcctg gtgaaggcct acctgcacat gcccccagac gctcttcagc
     3481 agctggtgct tacagcagag acggcggctg cacagggctt cctgacgctc atgcatcgtt
     3541 cctgggctaa gctgagggtt caaccatccg aggagcaggc catgggccgc ctgacagcct
     3601 tgctgctcca gcggcaccca cacctcacct cccagctctt catcgacatg tcaccgctca
     3661 tccccttcct ggctgtccct gacctcatgc gcttcccacc gtcccttttg gccaatgaca
     3721 gtgtcctggc tgccatccgg gatcacagct caggaatgaa gcctgaacag aaggaggccc
     3781 tggcaaagcg actgctggcc cctgagctgt ttggagaagt gcctgattgg ccccaggagc
     3841 tgctgtgggc ggccctgcct ctgcttccct atctccccct ggagagcttt ctccagctca
     3901 gccctcacca gatccaggcc ctggaggata tctggccagt agcaggtctt gggccgggac
     3961 acgcccggca cgtgcttcgt agcctagtga accagagcat agaggatggt gaggagcagg
     4021 tgcgcaggct tgggtccctc gcgtgcttcc tgagtcctga ggagctacag agtctggtgc
     4081 ccttgagtga tccgatgggg cctgtagaac agggcctgct ggaatgtgcg gccaatggga
     4141 ccctcagccc agaaggacgg gtagcatatg aacttctggg ggtgttgcgt tcatctggag
     4201 gaactgtctt aagcccccga gagctgcggg tctgggcacc tctctttccc cagctgggcc
     4261 tccgcttcct gcaggagctt tcagagcccc agcttagagc catgcttcct gccctacagg
     4321 gagccagtgt cacacctgcc caggctgttc tgttgtttgg aaggctcctt cctaggcatg
     4381 atctgtccct ggaggaactc tgctccctgc accctctcct gccaggtctc agtccccaga
     4441 cactccaggc catccctaag cgagttctgg ttggtgcttg ttcctgcctg ggccctgaac
     4501 tgtcaaggct ttcagcttgc cagatcgcag ctctgcttca gacctttcgg gtaaaagatg
     4561 gtgttaaaaa tatgggtgca gcaggggccg gcacaactgt gtgcattcct ggtcagccca
     4621 cccccaccac ttggccagac tgcctgcttc ccctgctccc gttaaagctg ctacaactgg
     4681 acactgcagc tcttctggca aaccgaagac tctatcggca actgccttgg tctgagcagc
     4741 aggcacagtt tctctggaag aagatgcaag tgcccaccaa cctgaccctg aggagtctgc
     4801 aggctctggg caacctggca ggaggcatgt cctgtgagtt tctgcagcag atcagctcaa
     4861 tggtagactt ccttgatgtg gtacacatgc tctaccaact gcccattggt gttcgagaga
     4921 gcctgcgggc ctgtatctgg gcagagctac agcggaggat ggcaatgcca gagccagagc
     4981 tgaccaccct ggggccggaa ctgagtgagc ttgacactaa gctactcctg gacttgccga
     5041 tccagttgat ggacagattg tccaatgatt ccgttatgtt ggtggtggag ttggtccaag
     5101 gcgctccaga gcagctgctg gcactgaccc cactccacca ggcagccttg gcagaacgag
     5161 cacttaaagc cctggctcca aaggagaccc caatctccca ggaagtgctg gagacactgg
     5221 gccccttggt tggattcctg ggaatagaca gcacacgacg gatcccttta cccattctac
     5281 tgtctcatct cagtcagctg cagggcttct gcctaggaga gacatttgcc acagagctgg
     5341 gatggctgct gttgcaggag cctgttcttg gaaaaccaga attgtggagc cgagatgaaa
     5401 tagagcaagc tggacgccta gtattcactc tgtctgctga ggccatttcc ttgatcccca
     5461 gggaagcttt gggtccagag accctggagc gacttctggg aaagcagcag agctgggagc
     5521 agagcagagt gggacatctg tgtgggaagt cacagcttgc ccacaagaaa accgctctgg
     5581 tagctgggat cgttcatccg gctgttgagg gtctccaaga ccctgtacca aattgtgcgg
     5641 acatacgggg aaccttccca gcagcctggt ctgcgacaca gatcgcagag atggaactct
     5701 cagactttga agactgcctg tcattatttg ctggagatcc aggacttggt cctgaggaac
     5761 tacaggcagc catgggcaag gccaagcagt tgtggggtcc ccctcgagga ttccgtcctg
     5821 agcagatctt gcagctgggc cgtctcctga taggtctagg agaacgggaa ctgcaggagc
     5881 ttaccctggt ggactggggt gtgctgagca gcctggggca aatagatggc tggagttctg
     5941 tccagctccg agctgtggtc tccagtttcc taaggcagag tggtcggcat gtgagccatc
     6001 tagacttcat ctatctgaca gcactgggct acacactctg tggattgcgg ccagaggagt
     6061 tacagcatat cagcagttgg gagtttagcc aagcagccct cttcctgggt agcttgcatc
     6121 tcccatgctc tgaggcacag ctggaagctc tggcctatct ccttgtgttg cctggtggct
     6181 ttggcccagt cagtaactgg gggcctgaga tcttcactga aattggcacg atagcagctg
     6241 gcatcccaga cctggctctt tcagcactac tgcggggaca gatccaaggc ctgactcctc
     6301 ttgccatttc tgtcattcct gcccccaagt ttgcagtggt cttcaacccc atccagttat
     6361 ccagtctcac caggggtcag gctgcagctg ttactcctga gcaaatggcc tacctgagtc
     6421 ctgagcagcg acgagcagtt gcatgggccc agcatgaagg gaaggagatc ccagaacagc
     6481 ggggtcgaag ctcagcctgg ggtctctgtg actggttcca tgcttcctgg gctctgacac
     6541 taaccatcag cttttttggc cacctattat aatcccgttt cttcagttga gggaggaaac
     6601 ttacatcata ctgaacacat tgtaaaggga agtgcattct aatttttctc a
//
