LOCUS       XM_039106115            1393 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus sperm-tail PG-rich repeat containing 3
            (Stpg3), transcript variant X6, mRNA.
ACCESSION   XM_039106115
VERSION     XM_039106115.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1393
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1393
                     /gene="Stpg3"
                     /note="sperm-tail PG-rich repeat containing 3; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 Protein, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:499746"
                     /db_xref="RGD:1561978"
     CDS             182..943
                     /gene="Stpg3"
                     /codon_start=1
                     /product="protein STPG3 isoform X5"
                     /protein_id="XP_038962043.1"
                     /db_xref="GeneID:499746"
                     /db_xref="RGD:1561978"
                     /translation="MWLPKMKRASSGFKLKSGTPNESTPIGTGTLRELWLERRPPILT
                     DLDVPGPTQYEAPNVSLRESSPHPQYTIGRKYPGREGGGRRAWQTMWLQSESPFTQKT
                     DFNRETKWPSPAEYTPLSQPAFPAFSFGSRRRSSAKIPERHFRPGMLRARGPCNYTPL
                     LATSKPSGEKRPGPNTYNIFPGCRLQSTRSPAFSMSRSPAFASWVSSTRTPGPAAYYV
                     EDCYNSRFPSPPGVVIQGVRRPKRHDTGPFCTLIE"
ORIGIN      
        1 cccagaatga actttgacca gaaggctgtg aaattcctgg caaactttta catcaatgga
       61 ggcaaacact ggactcgggg acccctgagt cagaaatctc ttcacctcac ccagtaattt
      121 ccgagggtcc aatgctactg tgctatggtg ggaccaggag ctggaggctg cctgggatga
      181 gatgtggctc ccaaagatga agagagcttc aagcggcttc aaattaaaat caggcactcc
      241 taatgagtcc acacctattg gcacagggac tctgagggag ctgtggctag agagacgtcc
      301 tccaatcctg acagacctgg atgtccctgg cccaacccag tatgaggcgc ccaatgtgtc
      361 tctgcgagaa tcttctccac acccccaata caccatcggg cgcaagtacc cgggtcgaga
      421 gggtggtggc cgcagggcat ggcagaccat gtggctccag agtgaaagcc ccttcacaca
      481 gaagactgac ttcaaccgag agacaaagtg gccatcgcct gccgagtaca cgccgttgag
      541 tcagcctgcc ttcccggcct tcagctttgg aagccgccgt cgctcttcgg ccaaaatacc
      601 tgagaggcat ttccgcccgg ggatgctccg agcccgaggt ccttgtaact ataccccact
      661 cttggctacc tcaaagccct ctggcgagaa gcgacccggc cccaacacct ataacatctt
      721 tcctgggtgc cgtctgcaga gcacacgctc acccgccttc tccatgagcc gctctcctgc
      781 gtttgcatcc tgggtcagct ccacccgaac cccaggtcca gctgcctact acgtggaaga
      841 ctgctacaat tcacgcttcc cttctccacc tggagtagtt atccaaggag tgcggagacc
      901 caagcgccat gacacaggcc ccttctgcac actgatagaa taggaaaaga accctgtggc
      961 aatgtgggac aacctgatcc agtcacccga ggtccagcat ctacctgagg atcagggctg
     1021 cttgcttggc tgtggaacta ttgggatggg atgggaagcc agaacctatg gagctgtctt
     1081 cacacagcct tgcccagccc atgaggtagg acccagggag tcagctcacc agacatgggt
     1141 ctactggagc ctcgacctga agattcaact gtttttgcta acttgtgttc tgagaaccca
     1201 agcccaaagc cttcagccct agcccctgcc cagtgatggc tccctcagca ctgttgacct
     1261 gccttcctac ttagaaggag tacccttcag gagcctcacc ttgcagctag tcatagtagt
     1321 ttctccaggg ccctctccat attttcttcc tcacccagac atagatctca ctaaagaaca
     1381 ttttaaaaat gta
//
