LOCUS       XM_039106114            1408 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus sperm-tail PG-rich repeat containing 3
            (Stpg3), transcript variant X3, mRNA.
ACCESSION   XM_039106114
VERSION     XM_039106114.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039106114.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1408
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1408
                     /gene="Stpg3"
                     /note="sperm-tail PG-rich repeat containing 3; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 EST, 2 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:499746"
                     /db_xref="RGD:1561978"
     CDS             35..958
                     /gene="Stpg3"
                     /codon_start=1
                     /product="protein STPG3 isoform X2"
                     /protein_id="XP_038962042.1"
                     /db_xref="GeneID:499746"
                     /db_xref="RGD:1561978"
                     /translation="MNFDQKAVKFLANFYINGGKHWTRGPLSQKSLHLTQSNATVLWW
                     DQELEAAWDEMWLPKMKRASSGFKLKSGTPNESTPIGTGTLRELWLERRPPILTDLDV
                     PGPTQYEAPNVSLRESSPHPQYTIGRKYPGREGGGRRAWQTMWLQSESPFTQKTDFNR
                     ETKWPSPAEYTPLSQPAFPAFSFGSRRRSSAKIPERHFRPGMLRARGPCNYTPLLATS
                     KPSGEKRPGPNTYNIFPGCRLQSTRSPAFSMSRSPAFASWVSSTRTPGPAAYYVEDCY
                     NSRFPSPPGVVIQGVRRPKRHDTGPFCTLIE"
ORIGIN      
        1 cagtgcgctc aggcaaagga acccaggccc cagaatgaac tttgaccaga aggctgtgaa
       61 attcctggca aacttttaca tcaatggagg caaacactgg actcggggac ccctgagtca
      121 gaaatctctt cacctcaccc agtccaatgc tactgtgcta tggtgggacc aggagctgga
      181 ggctgcctgg gatgagatgt ggctcccaaa gatgaagaga gcttcaagcg gcttcaaatt
      241 aaaatcaggc actcctaatg agtccacacc tattggcaca gggactctga gggagctgtg
      301 gctagagaga cgtcctccaa tcctgacaga cctggatgtc cctggcccaa cccagtatga
      361 ggcgcccaat gtgtctctgc gagaatcttc tccacacccc caatacacca tcgggcgcaa
      421 gtacccgggt cgagagggtg gtggccgcag ggcatggcag accatgtggc tccagagtga
      481 aagccccttc acacagaaga ctgacttcaa ccgagagaca aagtggccat cgcctgccga
      541 gtacacgccg ttgagtcagc ctgccttccc ggccttcagc tttggaagcc gccgtcgctc
      601 ttcggccaaa atacctgaga ggcatttccg cccggggatg ctccgagccc gaggtccttg
      661 taactatacc ccactcttgg ctacctcaaa gccctctggc gagaagcgac ccggccccaa
      721 cacctataac atctttcctg ggtgccgtct gcagagcaca cgctcacccg ccttctccat
      781 gagccgctct cctgcgtttg catcctgggt cagctccacc cgaaccccag gtccagctgc
      841 ctactacgtg gaagactgct acaattcacg cttcccttct ccacctggag tagttatcca
      901 aggagtgcgg agacccaagc gccatgacac aggccccttc tgcacactga tagaatagga
      961 aaagaaccct gtggcaatgt gggacaacct gatccagtca cccgaggtcc agcatctacc
     1021 tgaggatcag ggctgcttgc ttggctgtgg aactattggg atgggatggg aagccagaac
     1081 ctatggagct gtcttcacac agccttgccc agcccatgag gtaggaccca gggagtcagc
     1141 tcaccagaca tgggtctact ggagcctcga cctgaagatt caactgtttt tgctaacttg
     1201 tgttctgaga acccaagccc aaagccttca gccctagccc ctgcccagtg atggctccct
     1261 cagcactgtt gacctgcctt cctacttaga aggagtaccc ttcaggagcc tcaccttgca
     1321 gctagtcata gtagtttctc cagggccctc tccatatttt cttcctcacc cagacataga
     1381 tctcactaaa gaacatttta aaaatgta
//
