LOCUS       XM_006233650            1278 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus sperm-tail PG-rich repeat containing 3
            (Stpg3), transcript variant X5, mRNA.
ACCESSION   XM_006233650
VERSION     XM_006233650.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006233650.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006233650.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1278
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1278
                     /gene="Stpg3"
                     /note="sperm-tail PG-rich repeat containing 3; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 EST, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:499746"
                     /db_xref="RGD:1561978"
     CDS             35..823
                     /gene="Stpg3"
                     /codon_start=1
                     /product="protein STPG3 isoform X4"
                     /protein_id="XP_006233712.1"
                     /db_xref="GeneID:499746"
                     /db_xref="RGD:1561978"
                     /translation="MNFDQKAVKFLANFYINGGKHWTRGPLSQKSLHLTQSNATVLWW
                     DQELEAAWDEMWLPKMKRASSGFKLKSGTPNESTPIGTGTLRELWLERRPPILTDLDV
                     PGPTQYEAPNVSLRESSPHPQYTIGRKYPGREGGGRRAWQTMWLQSESPFTQKTDFNR
                     ETKWPSPAEYTPLSQPAFPAFSFGSRRRSSAKIPERHFRPGMLRARGPCNYTPLLATS
                     KPSGEKRPGPNTYNIFPGCRLQSTRSPAFSMSRSPAFASWVSSR"
ORIGIN      
        1 cagtgcgctc aggcaaagga acccaggccc cagaatgaac tttgaccaga aggctgtgaa
       61 attcctggca aacttttaca tcaatggagg caaacactgg actcggggac ccctgagtca
      121 gaaatctctt cacctcaccc agtccaatgc tactgtgcta tggtgggacc aggagctgga
      181 ggctgcctgg gatgagatgt ggctcccaaa gatgaagaga gcttcaagcg gcttcaaatt
      241 aaaatcaggc actcctaatg agtccacacc tattggcaca gggactctga gggagctgtg
      301 gctagagaga cgtcctccaa tcctgacaga cctggatgtc cctggcccaa cccagtatga
      361 ggcgcccaat gtgtctctgc gagaatcttc tccacacccc caatacacca tcgggcgcaa
      421 gtacccgggt cgagagggtg gtggccgcag ggcatggcag accatgtggc tccagagtga
      481 aagccccttc acacagaaga ctgacttcaa ccgagagaca aagtggccat cgcctgccga
      541 gtacacgccg ttgagtcagc ctgccttccc ggccttcagc tttggaagcc gccgtcgctc
      601 ttcggccaaa atacctgaga ggcatttccg cccggggatg ctccgagccc gaggtccttg
      661 taactatacc ccactcttgg ctacctcaaa gccctctggc gagaagcgac ccggccccaa
      721 cacctataac atctttcctg ggtgccgtct gcagagcaca cgctcacccg ccttctccat
      781 gagccgctct cctgcgtttg catcctgggt cagctccaga tagaatagga aaagaaccct
      841 gtggcaatgt gggacaacct gatccagtca cccgaggtcc agcatctacc tgaggatcag
      901 ggctgcttgc ttggctgtgg aactattggg atgggatggg aagccagaac ctatggagct
      961 gtcttcacac agccttgccc agcccatgag gtaggaccca gggagtcagc tcaccagaca
     1021 tgggtctact ggagcctcga cctgaagatt caactgtttt tgctaacttg tgttctgaga
     1081 acccaagccc aaagccttca gccctagccc ctgcccagtg atggctccct cagcactgtt
     1141 gacctgcctt cctacttaga aggagtaccc ttcaggagcc tcaccttgca gctagtcata
     1201 gtagtttctc cagggccctc tccatatttt cttcctcacc cagacataga tctcactaaa
     1261 gaacatttta aaaatgta
//
