LOCUS       NM_001399436            1760 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus sperm-tail PG-rich repeat containing 3 (Stpg3),
            mRNA.
ACCESSION   NM_001399436 XM_575081
VERSION     NM_001399436.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1760)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1760)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On Jan 7, 2022 this sequence version replaced XM_575081.8.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360181.2250485.1,
                                           SRR26360181.1022800.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-126               JAXUCZ010000003.1  28428567-28428692   c
            127-284             JAXUCZ010000003.1  28428310-28428467   c
            285-419             JAXUCZ010000003.1  28428075-28428209   c
            420-508             JAXUCZ010000003.1  28427897-28427985   c
            509-803             JAXUCZ010000003.1  28427347-28427641   c
            804-1760            JAXUCZ010000003.1  28426283-28427239   c
FEATURES             Location/Qualifiers
     source          1..1760
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3p13"
     gene            1..1760
                     /gene="Stpg3"
                     /note="sperm-tail PG-rich repeat containing 3"
                     /db_xref="GeneID:499746"
                     /db_xref="RGD:1561978"
     exon            1..126
                     /gene="Stpg3"
                     /inference="alignment:Splign:2.1.0"
     CDS             20..937
                     /gene="Stpg3"
                     /note="uncharacterized protein C9orf173 homolog"
                     /codon_start=1
                     /product="protein STPG3"
                     /protein_id="NP_001386365.1"
                     /db_xref="GeneID:499746"
                     /db_xref="RGD:1561978"
                     /translation="MNFDQKAVKFLANFYINGGKHWTRGPLSQKSLHLTQSNATVLWW
                     DQELEAAWDEMWLPKMKRASSGFKLKSGTPNESTPIGTGTLRELWLERRPPILTDLDV
                     PGPTQYEAPNVSLRESSPHPQYTIGRKYPGREGGGRRAWQTMWLQSESPFTQKTDFNR
                     ETKWPSPAEYTPLSQPAFPAFSFGSRRRSSAKIPERHFRPGMLRARGPCNYTPLLATS
                     KPSGEKRPGPNTYNIFPGCRLQSTRSPAFSMSRSPAFASWVSSTRTPGPAAYYVEDCY
                     NSRFPSPPGVVIQGVRRPKRHDTGPFCTL"
     exon            127..284
                     /gene="Stpg3"
                     /inference="alignment:Splign:2.1.0"
     exon            285..419
                     /gene="Stpg3"
                     /inference="alignment:Splign:2.1.0"
     exon            420..508
                     /gene="Stpg3"
                     /inference="alignment:Splign:2.1.0"
     exon            509..803
                     /gene="Stpg3"
                     /inference="alignment:Splign:2.1.0"
     exon            804..1760
                     /gene="Stpg3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aaggaaccca ggccccagaa tgaactttga ccagaaggct gtgaaattcc tggcaaactt
       61 ttacatcaat ggaggcaaac actggactcg gggacccctg agtcagaaat ctcttcacct
      121 cacccagtcc aatgctactg tgctatggtg ggaccaggag ctggaggctg cctgggatga
      181 gatgtggctc ccaaagatga agagagcttc aagcggcttc aaattaaaat caggcactcc
      241 taatgagtcc acacctattg gcacagggac tctgagggag ctgtggctag agagacgtcc
      301 tccaatcctg acagacctgg atgtccctgg cccaacccag tatgaggcgc ccaatgtgtc
      361 tctgcgagaa tcttctccac acccccaata caccatcggg cgcaagtacc cgggtcgaga
      421 gggtggtggc cgcagggcat ggcagaccat gtggctccag agtgaaagcc ccttcacaca
      481 gaagactgac ttcaaccgag agacaaagtg gccatcgcct gccgagtaca cgccgttgag
      541 tcagcctgcc ttcccggcct tcagctttgg aagccgccgt cgctcttcgg ccaaaatacc
      601 tgagaggcat ttccgcccgg ggatgctccg agcccgaggt ccttgtaact ataccccact
      661 cttggctacc tcaaagccct ctggcgagaa gcgacccggc cccaacacct ataacatctt
      721 tcctgggtgc cgtctgcaga gcacacgctc acccgccttc tccatgagcc gctctcctgc
      781 gtttgcatcc tgggtcagct ccacccgaac cccaggtcca gctgcctact acgtggaaga
      841 ctgctacaat tcacgcttcc cttctccacc tggagtagtt atccaaggag tgcggagacc
      901 caagcgccat gacacaggcc ccttctgcac actgtaggcc catcggatat agattgcaaa
      961 actgacctct cttgaggctt tcctaggctt cctttggaac tctttgtagc ctggccttct
     1021 gaccctctag acacccctca cccactcttc tagcttaggc tgtgcaataa gaagagtctt
     1081 cctagagtct ccctaacccc cgctataccg agatacaaat gattcttctg aactgtggtc
     1141 tctggtgtgc ctggttgccc atcctttgcc taatgggctg tcttgaatat gtgacttcct
     1201 gcttccctgg tatttctggc tttctttgtt cctgcatggt gttcttttct tcaggattga
     1261 aatagtagcc tgggaactaa ccctaagctt tctgacctag gatagaatag gaaaagaacc
     1321 ctgtggcaat gtgggacaac ctgatccagt cacccgaggt ccagcatcta cctgaggatc
     1381 agggctgctt gcttggctgt ggaactattg ggatgggatg ggaagccaga acctatggag
     1441 ctgtcttcac acagccttgc ccagcccatg aggtaggacc cagggagtca gctcaccaga
     1501 catgggtcta ctggagcctc gacctgaaga ttcaactgtt tttgctaact tgtgttctga
     1561 gaacccaagc ccaaagcctt cagccctagc ccctgcccag tgatggctcc ctcagcactg
     1621 ttgacctgcc ttcctactta gaaggagtac ccttcaggag cctcaccttg cagctagtca
     1681 tagtagtttc tccagggccc tctccatatt ttcttcctca cccagacata gatctcacta
     1741 aagaacattt taaaaatgta
//
