LOCUS       NM_182954               3131 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus stonin 1 (Ston1), mRNA.
ACCESSION   NM_182954 XM_237504
VERSION     NM_182954.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3131)
  AUTHORS   Feutlinske,F., Browarski,M., Ku,M.C., Trnka,P., Waiczies,S.,
            Niendorf,T., Stallcup,W.B., Glass,R., Krause,E. and Maritzen,T.
  TITLE     Stonin1 mediates endocytosis of the proteoglycan NG2 and regulates
            focal adhesion dynamics and cell motility
  JOURNAL   Nat Commun 6, 8535 (2015)
   PUBMED   26437238
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3131)
  AUTHORS   Florea,L., Di Francesco,V., Miller,J., Turner,R., Yao,A.,
            Harris,M., Walenz,B., Mobarry,C., Merkulov,G.V., Charlab,R.,
            Dew,I., Deng,Z., Istrail,S., Li,P. and Sutton,G.
  TITLE     Gene and alternative splicing annotation with AIR
  JOURNAL   Genome Res 15 (1), 54-66 (2005)
   PUBMED   15632090
REFERENCE   3  (bases 1 to 3131)
  AUTHORS   Walther,K., Krauss,M., Diril,M.K., Lemke,S., Ricotta,D., Honing,S.,
            Kaiser,S. and Haucke,V.
  TITLE     Human stoned B interacts with AP-2 and synaptotagmin and
            facilitates clathrin-coated vesicle uncoating
  JOURNAL   EMBO Rep 2 (7), 634-640 (2001)
   PUBMED   11454741
  REMARK    Erratum:[EMBO Rep 2002 Feb;3(2):197]
REFERENCE   4  (bases 1 to 3131)
  AUTHORS   Martina,J.A., Bonangelino,C.J., Aguilar,R.C. and Bonifacino,J.S.
  TITLE     Stonin 2: an adaptor-like protein that interacts with components of
            the endocytic machinery
  JOURNAL   J Cell Biol 153 (5), 1111-1120 (2001)
   PUBMED   11381094
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000006.1.
            
            On Dec 19, 2009 this sequence version replaced NM_182954.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643429.22395.1,
                                           SRR26643290.21690.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN12840107, SAMN12840111
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-283               JAXUCZ010000006.1  11615353-11615635   c
            284-2248            JAXUCZ010000006.1  11603880-11605844   c
            2249-2451           JAXUCZ010000006.1  11600199-11600401   c
            2452-3131           JAXUCZ010000006.1  11598700-11599379   c
FEATURES             Location/Qualifiers
     source          1..3131
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q12"
     gene            1..3131
                     /gene="Ston1"
                     /gene_synonym="Salf; Sblf"
                     /note="stonin 1"
                     /db_xref="GeneID:360202"
                     /db_xref="RGD:727878"
     exon            1..283
                     /gene="Ston1"
                     /gene_synonym="Salf; Sblf"
                     /inference="alignment:Splign:2.1.0"
     exon            284..2248
                     /gene="Ston1"
                     /gene_synonym="Salf; Sblf"
                     /inference="alignment:Splign:2.1.0"
     CDS             331..2526
                     /gene="Ston1"
                     /gene_synonym="Salf; Sblf"
                     /note="stoned B/TFIIA-alpha/beta-like factor; stoned
                     B-like factor"
                     /codon_start=1
                     /product="stonin-1"
                     /protein_id="NP_891999.2"
                     /db_xref="GeneID:360202"
                     /db_xref="RGD:727878"
                     /translation="MCSTNPGSWVTFDDDSLFQSSPKKKDLSLETQGVCRPNGLKLDL
                     PGLRDLPNTPSSTGSTPLSSPMVDFYFSPGPPSNSPLSTPTKDFPGFPGIPKAGTHVL
                     YPIPECSSSGPPTTAGGAGPPLSLTKPTCSPHVSLPSGHSHTQLTPTAGLTEDASPRG
                     VQSEARQFEYFQDDCAFSNPFWKDEGGNSQFPFDSLASRKLFSPRDKEVPDDQKSLNQ
                     CSLNYICEKLEHLQSAETQDPLGNLSMQSSYAGGTFSFVPHTLFRSQPKAGWSFMLRI
                     PEKKNMMSSRQWGPIFLKVLPGGILQMYYEKGLEKPFKEFQLNPHCRLSEPKLENFSM
                     AGKIHTVKVEHVSYSEKRKYHSKVEVVHEPEVEQMLKLGSTEHRDFLEFLTTVEEELV
                     KLPATAKPKNKIYEEQEIHLDILDSFWGKVTKEEGKLVESAVLTQVCCLCFLNGPAEC
                     FLALNDLELQKRDERYFEKEPEKRGIDILNYHFHTCVNAEEFERSRIIKFVPPDACRF
                     ELMRFRTSSEGDELPFSVKSIVTVQGAYVELQAFVNMTPAVQRSPHAGSLRSCNNIMI
                     HFPVPAQWIKALWTRNLQRQKSLKAKMNRRACLGSLQGPELEPVIQVTVGSAKYESAY
                     RAVVWKIDRLPDKNTSPDQPHCLSYKLELGSDQEVPSDWDPFATVQFSMSEACASRTE
                     VRSLGVESDAQPQKHVCQRACYNIQVEIEKKWIQIDGEDPDKAGGCVTQ"
     exon            2249..2451
                     /gene="Ston1"
                     /gene_synonym="Salf; Sblf"
                     /inference="alignment:Splign:2.1.0"
     exon            2452..3131
                     /gene="Ston1"
                     /gene_synonym="Salf; Sblf"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gccagagatg ttcagcctcg gtaaaagccc agaggctgga gcgggagtct gcctgaccgt
       61 gactatgggg tccagctgac agcttccagg gacagcttca gcatcagtcc ctcaacttct
      121 ggcacattca gaggagcaag atattagggt ccatgtgaaa tgaggccgtt cctctccaca
      181 gaccggcaat gatgtggaga caaagcctta gccacaagtg gtctggaatg ttactttgcc
      241 agctaaaggc caccagtcgg atttcaacaa tctgcaggag atgagacaat gtccctgact
      301 ctttgaccag accacaagcc catcttgaag atgtgttcta caaacccagg cagctgggtc
      361 acctttgacg atgactctct ttttcagtct tctccgaaga aaaaggattt atctctggag
      421 actcaaggtg tttgcagacc aaatggactg aagctggacc ttcctggcct cagggacctt
      481 cccaataccc cctcctccac cggcagcacc cctttgtcct ctcccatggt ggacttttac
      541 ttcagtccag ggcctccaag caactcgcct ctttctacac ccaccaaaga cttcccgggg
      601 ttccctggca tccctaaagc ggggacacat gtgctttatc ctattccaga gtgttcttca
      661 agcggtcccc ccacaacagc gggaggagca ggtcccccgt tatcacttac taagccaacc
      721 tgctcacccc atgtatcgtt acccagtggc cactcgcaca cccagctgac tcccacagcg
      781 ggtcttacag aagacgccag ccctcggggg gtccaaagcg aggctcgaca gttcgagtat
      841 tttcaggatg actgtgcttt ttccaaccca ttttggaaag atgaaggtgg caactctcag
      901 tttccctttg actccctggc aagcagaaag ctgttctcac caagggacaa ggaggtacct
      961 gacgatcaaa aaagcctaaa ccagtgctca ttgaactaca tctgtgagaa gctcgaacac
     1021 ttgcagtcag cggagaccca agaccctctt ggaaacttgt ctatgcagag ctcgtacgct
     1081 ggaggcacat tctcttttgt cccacacacc ctcttccgga gtcagcccaa agctggatgg
     1141 tccttcatgt tgaggattcc tgagaagaag aacatgatgt cttcccggca gtggggaccc
     1201 attttcctaa aggttcttcc cggcgggatc ctgcagatgt actatgagaa ggggctggaa
     1261 aaaccattca aagagttcca gctcaatccg cattgcagac tctcggaacc caaactggag
     1321 aacttcagca tggcagggaa gatccacact gtgaaggtag agcacgtgtc ttactccgag
     1381 aaaaggaaat accattccaa ggtggaggtg gttcacgagc ccgaggtgga gcagatgctg
     1441 aagctagggt ccacggaaca ccgtgacttc cttgaatttc tgactactgt ggaagaggag
     1501 ctagtaaagc tgccggctac ggcaaaaccg aagaacaaaa tctatgagga gcaagagatt
     1561 cacctggaca ttctggacag cttctggggc aaagtgacca aggaagaggg caagctggtc
     1621 gagagcgctg tgctaactca ggtctgctgc ctctgctttc taaacgggcc agcggaatgt
     1681 ttcttagcct taaatgacct cgagctccag aaacgagatg aacgctattt tgagaaagaa
     1741 ccagaaaaaa gggggattga tattcttaac taccattttc atacgtgcgt gaatgctgaa
     1801 gaatttgaac ggtccagaat cattaagttc gtacctccag atgcttgccg gttcgagctg
     1861 atgcgtttca gaacctcgag tgaaggggat gagcttccct tctcggtgaa gtccatagtg
     1921 actgtccagg gagcctatgt ggagctgcag gcctttgtca acatgacccc agcagttcag
     1981 aggtcacccc atgcaggttc cctgaggagc tgtaacaata tcatgattca ttttcccgtc
     2041 ccagcccagt ggatcaaggc cctctggacc aggaaccttc agaggcagaa gtccctgaaa
     2101 gccaaaatga accgtcgggc atgcctgggg agtttacagg ggcctgaatt ggaacctgtc
     2161 attcaggtca ctgtggggtc agcaaaatat gagagtgcct accgggctgt ggtgtggaag
     2221 atagatcgac tcccggacaa aaacacaagt cccgatcagc cccattgtct gtcatacaaa
     2281 ctagaacttg ggtcagacca ggaggttcct tcagattggg atccatttgc taccgtccag
     2341 ttttccatgt ctgaagcctg tgcctccagg acagaagtga ggtctctggg agtggagagt
     2401 gacgcccagc ctcagaagca tgtgtgtcag cgagcttgct acaacatcca ggttgaaata
     2461 gaaaagaagt ggattcaaat agatggagag gacccagata aagctggtgg ctgtgtgact
     2521 cagtaaacaa tggcgcccct tgggtcaaat gcagaaccga cacacagggc aggaagttct
     2581 gttgctgtat ggtaggactg agtagcagct ttaggccaga gatccagtgg tgagttccaa
     2641 agcaggccat gtgcatgtga cccttctgat gccctggatt gtgtctggga ctcgtaccag
     2701 atacatcatg ttgaaacctg gaggcgctgc tgtctgacat gagacctgct ggccagtttg
     2761 gctgaagggt acttgggttt ggatgactca gtgactttgt tttcataacc tgagttagag
     2821 gattccctgt ctctacttgc tctctgtgtg gaacagttcg agaagaggag aagagttagg
     2881 tatgaccttg ttggagggag tgtcactggg gctaggcttt gaggttgtaa aagcccaagc
     2941 gaggcccagt gtctctgtct ctgtctctgt ttctgtctgt ctctctgtct ttctgtctct
     3001 ttgtctctgt ctctctgtct ttctgtttct ctgtctgtct gtctctctct ttccctgtgt
     3061 gtgtgtctgt ctctctctgt ctctctgctg ccgccttctt cttcctcctc ctcttcctcc
     3121 tcctttcttc t
//
