LOCUS       NM_001305238            1987 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus stomatin like 1 (Stoml1), mRNA.
ACCESSION   NM_001305238 XM_001074725 XM_236297
VERSION     NM_001305238.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1987)
  AUTHORS   Kozlenkov,A., Lapatsina,L., Lewin,G.R. and Smith,E.S.
  TITLE     Subunit-specific inhibition of acid sensing ion channels by
            stomatin-like protein 1
  JOURNAL   J Physiol 592 (4), 557-569 (2014)
   PUBMED   24247984
REFERENCE   2  (bases 1 to 1987)
  AUTHORS   Redshaw,N., Camps,C., Sharma,V., Motallebipour,M., Guzman-Ayala,M.,
            Oikonomopoulos,S., Thymiakou,E., Ragoussis,J. and Episkopou,V.
  TITLE     TGF-beta/Smad2/3 signaling directly regulates several miRNAs in
            mouse ES cells and early embryos
  JOURNAL   PLoS One 8 (1), e55186 (2013)
   PUBMED   23390484
REFERENCE   3  (bases 1 to 1987)
  AUTHORS   Tarantino,C., Paolella,G., Cozzuto,L., Minopoli,G., Pastore,L.,
            Parisi,S. and Russo,T.
  TITLE     miRNA 34a, 100, and 137 modulate differentiation of mouse embryonic
            stem cells
  JOURNAL   FASEB J 24 (9), 3255-3263 (2010)
   PUBMED   20439489
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000008.1.
            
            On or before Mar 5, 2015 this sequence version replaced
            XM_236297.8, XM_001074725.5.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments and orthologous data.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360172.2028979.1,
                                           SRR22582416.754712.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-212               JAXUCZ010000008.1  67557866-67558077
            213-319             JAXUCZ010000008.1  67559445-67559551
            320-469             JAXUCZ010000008.1  67561165-67561314
            470-673             JAXUCZ010000008.1  67561547-67561750
            674-866             JAXUCZ010000008.1  67563452-67563644
            867-1082            JAXUCZ010000008.1  67564037-67564252
            1083-1987           JAXUCZ010000008.1  67564830-67565734
FEATURES             Location/Qualifiers
     source          1..1987
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q24"
     gene            1..1987
                     /gene="Stoml1"
                     /gene_synonym="RGD1559463"
                     /note="stomatin like 1"
                     /db_xref="GeneID:300748"
                     /db_xref="RGD:1559463"
     exon            1..212
                     /gene="Stoml1"
                     /gene_synonym="RGD1559463"
                     /inference="alignment:Splign:2.1.0"
     CDS             80..1276
                     /gene="Stoml1"
                     /gene_synonym="RGD1559463"
                     /note="stomatin (EPB72)-like 1"
                     /codon_start=1
                     /product="stomatin-like protein 1"
                     /protein_id="NP_001292167.1"
                     /db_xref="GeneID:300748"
                     /db_xref="RGD:1559463"
                     /translation="MLGRSGYRALPLGDFDRFQQSSFGFLGSQKGCLSPEPGGVGPGA
                     DAPESWPSCLCHGLISFLGFLLLLLTFPISGWFALKIVPTYERMIVFRLGRIRNPQGP
                     GMVLLLPFIDSFQRVDLRTRAFNVPPCKLASKDGAVLSVGADVQFRIWDPVLSVMAVK
                     DLNAATRMTAHNAMTKALLRRPLQEIQMEKLKIGDQLLLEINDVTRAWGLEVDRVELA
                     VEAVLQPPQDSLAVPSLDSTLQQLALHFLGGSMTSVGRVPSPGSDTLEMINEVEPPAS
                     RAGAGTEPSPKQPVAEGLLTALQPFLSESLVSQVGACYQFNVLLPSGTQSIYFLDLTT
                     GQGRVGHGVPDGIPDVVVEMAEADLQALLCKELRPLGAYMSGRLKVKGDLAVVMKLEA
                     VLKALK"
     exon            213..319
                     /gene="Stoml1"
                     /gene_synonym="RGD1559463"
                     /inference="alignment:Splign:2.1.0"
     exon            320..469
                     /gene="Stoml1"
                     /gene_synonym="RGD1559463"
                     /inference="alignment:Splign:2.1.0"
     exon            470..673
                     /gene="Stoml1"
                     /gene_synonym="RGD1559463"
                     /inference="alignment:Splign:2.1.0"
     exon            674..866
                     /gene="Stoml1"
                     /gene_synonym="RGD1559463"
                     /inference="alignment:Splign:2.1.0"
     exon            867..1082
                     /gene="Stoml1"
                     /gene_synonym="RGD1559463"
                     /inference="alignment:Splign:2.1.0"
     exon            1083..1987
                     /gene="Stoml1"
                     /gene_synonym="RGD1559463"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 acgaggaggg gcggagctgc cacgggctgg gcagggcagg ctcccagtgg aagctctggg
       61 cgtgtcccag ttagaagtca tgcttggcag gtcgggctac cgggcactgc ccttagggga
      121 ttttgatcgt ttccagcaat cgagcttcgg ctttctgggt tcgcagaagg gttgcttgtc
      181 cccagagccc ggcggcgtgg ggccgggggc cgatgcgcca gagagctggc cttcctgtct
      241 ctgccatggc ctcatcagct tcctggggtt cttgctgctg ctgctcacct ttcccatttc
      301 tggctggttt gctctgaaga ttgtgcccac ctacgagaga atgattgtgt ttcgactggg
      361 ccggatccgt aacccccagg ggcctggcat ggttcttctc ttgcccttca ttgactcctt
      421 ccagagggtg gatctgagga cccgagcctt caatgtccct ccttgcaagc tggcctctaa
      481 ggatggggct gtgctgtctg tgggagctga tgtccagttc cgcatctggg acccagtgct
      541 atccgtgatg gctgtgaagg acctgaacgc agccactcgc atgacagccc acaatgccat
      601 gaccaaggcc cttctcagaa ggccactgca ggagatccag atggagaagc tcaagatcgg
      661 tgaccagctc ctgctggaga tcaatgacgt gaccagagcg tggggactgg aggtagatcg
      721 tgtcgagctg gccgtagagg ctgtgctgca gccaccgcag gatagcctag ctgtgcccag
      781 cctggacagc accctccaac agctggccct ccacttccta gggggaagta tgacctcagt
      841 aggacgtgtt ccatccccag ggtcagatac attggaaatg ataaatgaag tggaaccacc
      901 tgcctctcgt gctggggctg ggactgagcc cagcccgaag cagcctgtgg ccgaggggct
      961 cctcactgcc ctgcaaccct tcctgtcaga gtcactggtc agccaggttg gggcctgcta
     1021 ccagttcaat gtcctcttgc ccagtggcac ccagagtatc tacttcctgg accttactac
     1081 aggacaaggc agagtggggc atggagttcc tgatggcatc cctgacgtgg tggtggagat
     1141 ggctgaggcg gacctacagg ccttgttgtg caaggaactt cggcccttgg gggcctacat
     1201 gagcgggcgg ctgaaggtga agggtgacct ggcggtggtc atgaagttgg aggctgtcct
     1261 caaggccttg aagtagcact gttagctgtc catccatcac cgagccctga acctggtgcc
     1321 aagccagaga agcctcttag aataggagat attggtttgg gccatggaaa actgaggcct
     1381 gaagatgttt caggcccaat gaggagaagc cggggaggct gggagacatc tgtggctggt
     1441 cacagctgag tcaggtgtcc cacaccttaa cctgtggtag ttctctggac aggcctttgc
     1501 tcaatcaatc cccaacaaat gcttagtcct gagttgctac acagagcgaa gacagagagc
     1561 ctgccccgcc ccgccccgcc cagctgataa cctgactgga gagacaagaa gcctgacaga
     1621 agcagcctga atggcagcca cgggaaggat caaagcacat ggattatgac tctgacatcc
     1681 agagagacca gaaggaaggg aagatgaggg agggcagccc ccaagaagag gttactgcag
     1741 tggatccagg tggccccgtc ttcctattgg caagccagaa caggctgggt ggggagggca
     1801 tgggatagaa cagtttgctt ttcctgtggg tctgctcctg aagacactgg gcctcatcca
     1861 ccagctccat cctgcatgtt tgaggagctg gcctcagggc agcatgtggg agagccctgc
     1921 tgttctgtgt gtgtttacta gaggcttgga gtctccaaca aataaatgtg gcatttacag
     1981 tgtggaa
//
