LOCUS       NM_001195504             732 bp    mRNA    linear   ROD 23-MAR-2023
DEFINITION  Rattus norvegicus short transmembrane mitochondrial protein 1
            (Stmp1), transcript variant 2, mRNA; nuclear gene for mitochondrial
            product.
ACCESSION   NM_001195504
VERSION     NM_001195504.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 732)
  AUTHORS   Carroll J, Altman MC, Fearnley IM and Walker JE.
  TITLE     Identification of membrane proteins by tandem mass spectrometry of
            protein ions
  JOURNAL   Proc Natl Acad Sci U S A 104 (36), 14330-14335 (2007)
   PUBMED   17720804
  REMARK    GeneRIF: reports the identification by tandem mass spec of a novel
            protein, proteolipid with a mass of 5,283 Da, (PL-5283).
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JACYVU010000141.1 and FM049367.1.
            
            [WARNING] On Apr 1, 2024 this sequence was replaced by
            NM_001195504.2.
            
            Transcript Variant: This variant (2) uses an alternate in-frame
            splice site in the 3' coding region, compared to variant 1. This
            results in a shorter protein (isoform 2), compared to isoform 1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ092616.1, FM091641.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: inferred from homology
            RefSeq Select criteria             :: based on conservation,
                                                  expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-78                JACYVU010000141.1  53547744-53547821
            79-603              FM049367.1         1-525
            604-732             JACYVU010000141.1  53557448-53557576
FEATURES             Location/Qualifiers
     source          1..732
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q22"
     gene            1..732
                     /gene="Stmp1"
                     /note="short transmembrane mitochondrial protein 1"
                     /db_xref="GeneID:689574"
                     /db_xref="RGD:1591053"
     exon            1..109
                     /gene="Stmp1"
                     /inference="alignment:Splign:2.1.0"
     CDS             95..238
                     /gene="Stmp1"
                     /note="isoform 2 is encoded by transcript variant 2;
                     PL-5283 protein; uncharacterized protein C7orf73 homolog"
                     /codon_start=1
                     /product="short transmembrane mitochondrial protein 1
                     isoform 2"
                     /protein_id="NP_001182433.1"
                     /db_xref="GeneID:689574"
                     /db_xref="RGD:1591053"
                     /translation="MLQFLLGFTLGNVVGMYLAQNYDMPNLAKKLEEIKKDLEAKKKP
                     PSS"
     exon            110..163
                     /gene="Stmp1"
                     /inference="alignment:Splign:2.1.0"
     exon            164..732
                     /gene="Stmp1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcggcgggtt ccgccctcgc gctggggcgg agtctcggag cagtgctgga gctgaagcat
       61 ctttcacacc ctcctcaccc tccccaccga catcatgctt cagttcctgc ttggatttac
      121 tttgggcaac gtggttggaa tgtatctggc ccagaactac gacatgccaa acctggctaa
      181 aaaacttgaa gagattaaaa aggacctgga agccaagaag aagcccccta gttcctgatg
      241 cccacctggc actgtattct ggacccacca attccgtccc ggggcctgcc ttcttcacag
      301 ccacatccaa agctgtgttc ctctttggtc tcagagcctg cgagttgcct cagatctaac
      361 accggcccga agtcgagtta gctcttcgtt tccagcatct cccctccccc cgtatcttct
      421 gtccagcagc ttctgagtcc taaggctgga actaaggtgc taggtcagca aacacaaccg
      481 taactggtat tcacctgtgc tctgagagac ccccgtggtc aaggaatgac tggctttgga
      541 tagccgctgc attcactgtc tagcagtgac agtaggagct tgctacacaa accaaatttt
      601 gttaaagtaa ttaaaatcag tatcttcaag ccagtttctg gtgaattaat ccatttgtta
      661 tataatgtta tcaaggaact ccacgattga taatttaacc aataaattgt ttgctggtca
      721 ttaaccaaaa aa
//
