LOCUS       XM_006239123            1081 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus stathmin 1 (Stmn1), transcript variant
            X1, mRNA.
ACCESSION   XM_006239123
VERSION     XM_006239123.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006239123.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006239123.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1081
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1081
                     /gene="Stmn1"
                     /gene_synonym="Lap18; OP18; PP17; PP19; PR22; prosolin;
                     SMN"
                     /note="stathmin 1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 11 mRNAs, 154 ESTs, 52
                     long SRA reads, 27 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     243 samples with support for all annotated introns"
                     /db_xref="GeneID:29332"
                     /db_xref="RGD:2992"
     CDS             197..646
                     /gene="Stmn1"
                     /gene_synonym="Lap18; OP18; PP17; PP19; PR22; prosolin;
                     SMN"
                     /codon_start=1
                     /product="stathmin isoform X1"
                     /protein_id="XP_006239185.1"
                     /db_xref="GeneID:29332"
                     /db_xref="RGD:2992"
                     /translation="MASSDIQVKELEKRASGQAFELILSPRSKESVPEFPLSPPKKKD
                     LSLEEIQKKLEAAEERRKSHEAEVLKQLAEKREHEKEVLQKAIEENNNFSKMAEEKLT
                     HKMEANKENREAQMAAKLERLREKDKHVEEVRKNKESKDPADETEAD"
ORIGIN      
        1 ggcgggactg gcacgtgcgg tcacccgcag ccaatgcggt gcgcctggtc cgggtcacgt
       61 gccgctgttt ggcgcttttg tgcgcgccca ggtctgttgg ttctcagagt gtggccaggc
      121 ggctcggact gagcagggct ttccttgcca gtggattgtg tagagtgtac agccagtctc
      181 ttgtcttctg tccaacatgg catcttctga tattcaggtg aaagagctgg agaagcgtgc
      241 ttccggccag gcttttgagc tgattctcag ccctcgatca aaagaatctg tccccgagtt
      301 ccccctttcc cccccaaaga agaaggatct ttccctggag gaaattcaga agaaattaga
      361 agctgcagaa gaaagacgca agtctcatga agcagaagtc ttgaagcagc tcgctgagaa
      421 gcgggagcat gaaaaagaag tgctccagaa agccattgag gagaacaaca acttcagcaa
      481 aatggcagag gagaaactga cccacaaaat ggaggctaac aaagagaacc gggaggcgca
      541 aatggctgcc aagctggagc gtttgcgaga gaaggacaag cacgttgaag aggtgcggaa
      601 gaacaaagaa tccaaagacc ccgcggacga gaccgaggct gactaagttg ttccgagaac
      661 tgactttctc cccgacccct tcctaaatat ccaaagactg tactggccag tgtcatttac
      721 tttttccctc ctgacaaata ttctagaagc tgatgtagga ccgtataggt agatccagac
      781 cgtgagatgt tttaggggct caaggggaga aactgaaagt gttttgctct tttttaaagt
      841 gttggtcttt ctaacgtagc tatttttctc gttgcatctt ttcctctcgg gcacactcgg
      901 tgtgctgggt taatggctag tgctgtattg actgtggaag acgttcgtga agagtatgta
      961 gtggcttctt ccaacccatt agatgctgag tatctgttca ctttgcgatc ccaattctgt
     1021 cccaatctca ccagatgcta ctgtacttga atggttaata aactgcacag tgctgttggt
     1081 c
//
