LOCUS       NM_001395744            2176 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus serine/threonine kinase-like domain containing 1
            (Stkld1), mRNA.
ACCESSION   NM_001395744 XM_006233785
VERSION     NM_001395744.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2176)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On Aug 4, 2021 this sequence version replaced XM_006233785.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC161886.1, SRR26360181.2754616.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-61                JAXUCZ010000003.1  30659903-30659963
            62-148              JAXUCZ010000003.1  30661143-30661229
            149-193             JAXUCZ010000003.1  30663447-30663491
            194-268             JAXUCZ010000003.1  30665748-30665822
            269-373             JAXUCZ010000003.1  30666752-30666856
            374-444             JAXUCZ010000003.1  30668943-30669013
            445-560             JAXUCZ010000003.1  30669699-30669814
            561-679             JAXUCZ010000003.1  30671338-30671456
            680-843             JAXUCZ010000003.1  30671641-30671804
            844-974             JAXUCZ010000003.1  30672502-30672632
            975-1058            JAXUCZ010000003.1  30673136-30673219
            1059-1175           JAXUCZ010000003.1  30674299-30674415
            1176-1316           JAXUCZ010000003.1  30675037-30675177
            1317-1445           JAXUCZ010000003.1  30675552-30675680
            1446-1574           JAXUCZ010000003.1  30676395-30676523
            1575-1703           JAXUCZ010000003.1  30676595-30676723
            1704-1844           JAXUCZ010000003.1  30677668-30677808
            1845-1924           JAXUCZ010000003.1  30677986-30678065
            1925-2176           JAXUCZ010000003.1  30678391-30678642
FEATURES             Location/Qualifiers
     source          1..2176
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3p13"
     gene            1..2176
                     /gene="Stkld1"
                     /gene_synonym="RGD1307355"
                     /note="serine/threonine kinase-like domain containing 1"
                     /db_xref="GeneID:311825"
                     /db_xref="RGD:1307355"
     exon            1..61
                     /gene="Stkld1"
                     /gene_synonym="RGD1307355"
                     /inference="alignment:Splign:2.1.0"
     CDS             47..2071
                     /gene="Stkld1"
                     /gene_synonym="RGD1307355"
                     /note="probable inactive protein kinase-like protein
                     SgK071"
                     /codon_start=1
                     /product="serine/threonine kinase-like domain-containing
                     protein STKLD1"
                     /protein_id="NP_001382673.1"
                     /db_xref="GeneID:311825"
                     /db_xref="RGD:1307355"
                     /translation="MEKYQILQKLSPGALGVNLVVEELETETKYLIKQVECIDEHHAN
                     KALEELMPLMKLQHSNISVYHEMFIMWDNEISSLFLCLVMDYYNQVTLQNIMENKRKI
                     KEVVDTEWMHTILSQVLDAIQYLHELNIVHRNLKPSNIIVINNSYCKLQDLSSQALMT
                     HEAKWNVRAEEDPCQKSWMAPETLKFSFSIKSDIWSLGCIILDMATCSFLNDAEAMHL
                     RKSIRHHPGSLKPILKTMEEKEIPGTDVYYLLLPFMLHINPSDRLSIKDVIHVTVMSN
                     SYMTSCVALNMQRQVVPIFITDVLLEGNMANILDVMQNFSHRPEVQLRALNKLLTMPE
                     DQLGLPWPTELVEEVITIIKQHEKVLDILLSACSLLLRVLGQALAHDSEAEIPKSSLI
                     TSFLMNALQSHPNSEGLVLVTYNVLSIISSQGQISEELEEKRLFELAQKHLERFQEDR
                     DICLGILSLLWSLLVDVDTVNKEPLENLSVSVTWVLAFHQEDMEVTEAGCAVLWLLSL
                     MGCIKEGQFEQVVVLLLRSIQLCPGRVLLVNNALRGLASLAKVSELVAFRTVVLEEGS
                     SGLHLVQDIYQLYKDDPEVVENICMLLAQLASYKEILPEMMSGGIKDLVQVIRGRFTS
                     SLELISYADEILQALEAATHPSPQEDQLEPPAMLEASKVSPLQADPLLRP"
     exon            62..148
                     /gene="Stkld1"
                     /gene_synonym="RGD1307355"
                     /inference="alignment:Splign:2.1.0"
     exon            149..193
                     /gene="Stkld1"
                     /gene_synonym="RGD1307355"
                     /inference="alignment:Splign:2.1.0"
     exon            194..268
                     /gene="Stkld1"
                     /gene_synonym="RGD1307355"
                     /inference="alignment:Splign:2.1.0"
     exon            269..373
                     /gene="Stkld1"
                     /gene_synonym="RGD1307355"
                     /inference="alignment:Splign:2.1.0"
     exon            374..444
                     /gene="Stkld1"
                     /gene_synonym="RGD1307355"
                     /inference="alignment:Splign:2.1.0"
     exon            445..560
                     /gene="Stkld1"
                     /gene_synonym="RGD1307355"
                     /inference="alignment:Splign:2.1.0"
     exon            561..679
                     /gene="Stkld1"
                     /gene_synonym="RGD1307355"
                     /inference="alignment:Splign:2.1.0"
     exon            680..843
                     /gene="Stkld1"
                     /gene_synonym="RGD1307355"
                     /inference="alignment:Splign:2.1.0"
     exon            844..974
                     /gene="Stkld1"
                     /gene_synonym="RGD1307355"
                     /inference="alignment:Splign:2.1.0"
     exon            975..1058
                     /gene="Stkld1"
                     /gene_synonym="RGD1307355"
                     /inference="alignment:Splign:2.1.0"
     exon            1059..1175
                     /gene="Stkld1"
                     /gene_synonym="RGD1307355"
                     /inference="alignment:Splign:2.1.0"
     exon            1176..1316
                     /gene="Stkld1"
                     /gene_synonym="RGD1307355"
                     /inference="alignment:Splign:2.1.0"
     exon            1317..1445
                     /gene="Stkld1"
                     /gene_synonym="RGD1307355"
                     /inference="alignment:Splign:2.1.0"
     exon            1446..1574
                     /gene="Stkld1"
                     /gene_synonym="RGD1307355"
                     /inference="alignment:Splign:2.1.0"
     exon            1575..1703
                     /gene="Stkld1"
                     /gene_synonym="RGD1307355"
                     /inference="alignment:Splign:2.1.0"
     exon            1704..1844
                     /gene="Stkld1"
                     /gene_synonym="RGD1307355"
                     /inference="alignment:Splign:2.1.0"
     exon            1845..1924
                     /gene="Stkld1"
                     /gene_synonym="RGD1307355"
                     /inference="alignment:Splign:2.1.0"
     exon            1925..2176
                     /gene="Stkld1"
                     /gene_synonym="RGD1307355"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggcttagccc cgcagaggga cagtgaggct gtcttgtcga gataccatgg aaaagtatca
       61 gattttgcaa aagctgagtc ctggggccct aggggtgaac ctggtggtgg aggaactgga
      121 aactgaaacc aagtacttga taaagcaggt agagtgtatt gatgagcacc atgccaacaa
      181 ggccctggag gagctgatgc ccctgatgaa gctccagcac tccaacatct ctgtgtacca
      241 tgagatgttc atcatgtggg acaatgagat ctcctctctg ttcctctgcc tggtgatgga
      301 ttattacaac caagtaaccc tccagaacat catggagaat aagaggaaga taaaagaggt
      361 tgttgacact gagtggatgc acaccatact aagccaggtg ttggatgcca tccagtacct
      421 acatgagttg aacatcgttc acaggaacct caagccttcc aacatcatcg tcattaacaa
      481 cagctactgt aaactgcaag acttgagctc ccaggcactg atgacccatg aagccaagtg
      541 gaatgtccga gcagaagaag acccctgcca gaagtcctgg atggctcctg aaactctcaa
      601 attctccttc tccatcaaat ccgacatctg gtccctgggc tgcatcattt tagacatggc
      661 cacgtgctcc ttcctgaatg acgcagaagc catgcacctg cggaagtcca ttcgccacca
      721 tccaggcagc ctgaagccca tcctgaaaac catggaggag aaggaaatcc ctggtacaga
      781 tgtctactat ttgcttctgc cctttatgct gcatatcaac ccctctgatc gactatcaat
      841 caaggatgtg attcacgtca ccgtcatgag caactcctac atgacctcct gtgttgctct
      901 gaacatgcag cggcaggtgg tgcccatctt catcactgac gtactgctag agggcaacat
      961 ggccaacatc ttagatgtca tgcagaattt ctcccatcga ccagaggtcc aactcagagc
     1021 ccttaacaag cttctgacaa tgccagagga tcagctaggc ctgccgtggc ccacagagct
     1081 ggtagaggag gtcatcacca tcataaagca gcatgagaag gtcctggata ttctgctcag
     1141 cgcctgctcc ctgctgctgc gtgttctggg ccaagcactg gcgcatgact cagaagctga
     1201 gatcccgaag agcagcttga tcacctcctt cctgatgaat gccttgcaga gccaccctaa
     1261 ctctgaaggc cttgttcttg tgacctacaa tgtgctcagc atcatctcta gccaaggaca
     1321 gatctcagag gagctagaag agaagagatt gtttgagctt gcccaaaagc acctggagcg
     1381 cttccaagag gacagggaca tctgcctcgg tatcctgagc ctgctctggt ccctcctggt
     1441 agatgttgac actgtgaaca aagagccctt ggagaacctc tcagtctcag tcacctgggt
     1501 gctggctttt catcaagagg acatggaagt aacagaggct ggctgcgcag tgctctggct
     1561 tctgtccttg atgggctgca taaaggaggg tcagtttgag caggtggtcg tgctgctgct
     1621 gagaagcatc cagctatgtc ctggcagagt acttctggtg aacaatgcac tccgcggctt
     1681 ggccagcctc gcaaaggtgt ctgaactggt ggccttccga acagtagtac tggaagaggg
     1741 cagcagtggc ctccacctcg tccaagacat ctaccagctc tacaaggatg accctgaggt
     1801 ggtggagaac atctgcatgc tgttggccca actggcctcc tacaaggaga tcctgccaga
     1861 gatgatgtct ggaggcatca aagacctagt ccaggtgatc cgggggcgct ttacctccag
     1921 tctggagctg atttcttatg ctgatgagat acttcaggca ttggaagcag ctacacatcc
     1981 tagcccccag gaggatcagc ttgaacctcc tgcaatgctg gaagcctcca aggtctcccc
     2041 actgcaggca gatcctctcc tcaggccctg acatgctgcc ctccaggtcc tgtggtaagg
     2101 gaaagtatca ctaggtccag tattgtatct tgcactccat ggtgactaat aaagaagccc
     2161 cagggtattc ctggca
//
