LOCUS       NM_198774               1637 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Rattus norvegicus STIM activating enhancer (Stimate), mRNA.
ACCESSION   NM_198774 XM_341396
VERSION     NM_198774.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1637)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1637)
  AUTHORS   Gerhard,D.S., Wagner,L., Feingold,E.A., Shenmen,C.M., Grouse,L.H.,
            Schuler,G., Klein,S.L., Old,S., Rasooly,R., Good,P., Guyer,M.,
            Peck,A.M., Derge,J.G., Lipman,D., Collins,F.S., Jang,W., Sherry,S.,
            Feolo,M., Misquitta,L., Lee,E., Rotmistrovsky,K., Greenhut,S.F.,
            Schaefer,C.F., Buetow,K., Bonner,T.I., Haussler,D., Kent,J.,
            Kiekhaus,M., Furey,T., Brent,M., Prange,C., Schreiber,K.,
            Shapiro,N., Bhat,N.K., Hopkins,R.F., Hsie,F., Driscoll,T.,
            Soares,M.B., Casavant,T.L., Scheetz,T.E., Brown-stein,M.J.,
            Usdin,T.B., Toshiyuki,S., Carninci,P., Piao,Y., Dudekula,D.B.,
            Ko,M.S., Kawakami,K., Suzuki,Y., Sugano,S., Gruber,C.E.,
            Smith,M.R., Simmons,B., Moore,T., Waterman,R., Johnson,S.L.,
            Ruan,Y., Wei,C.L., Mathavan,S., Gunaratne,P.H., Wu,J., Garcia,A.M.,
            Hulyk,S.W., Fuh,E., Yuan,Y., Sneed,A., Kowis,C., Hodgson,A.,
            Muzny,D.M., McPherson,J., Gibbs,R.A., Fahey,J., Helton,E.,
            Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M.,
            Madari,A., Young,A.C., Wetherby,K.D., Granite,S.J., Kwong,P.N.,
            Brinkley,C.P., Pearson,R.L., Bouffard,G.G., Blakesly,R.W.,
            Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J.,
            Myers,R.M., Butterfield,Y.S., Griffith,M., Griffith,O.L.,
            Krzywinski,M.I., Liao,N., Morin,R., Palmquist,D., Petrescu,A.S.,
            Skalska,U., Smailus,D.E., Stott,J.M., Schnerch,A., Schein,J.E.,
            Jones,S.J., Holt,R.A., Baross,A., Marra,M.A., Clifton,S.,
            Makowski,K.A., Bosak,S. and Malek,J.
  CONSRTM   MGC Project Team
  TITLE     The status, quality, and expansion of the NIH full-length cDNA
            project: the Mammalian Gene Collection (MGC)
  JOURNAL   Genome Res 14 (10B), 2121-2127 (2004)
   PUBMED   15489334
  REMARK    Erratum:[Genome Res. 2006 Jun;16(6):804. Morrin, Ryan [corrected to
            Morin, Ryan]]
REFERENCE   3  (bases 1 to 1637)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC088092.1.
            
            On Jan 2, 2005 this sequence version replaced NM_198774.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC088092.1, AY283801.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132264
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1637
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /map="16p16"
     gene            1..1637
                     /gene="Stimate"
                     /gene_synonym="Tmem110"
                     /note="STIM activating enhancer"
                     /db_xref="GeneID:361110"
                     /db_xref="RGD:735152"
     exon            1..249
                     /gene="Stimate"
                     /gene_synonym="Tmem110"
                     /inference="alignment:Splign:2.1.0"
     CDS             90..956
                     /gene="Stimate"
                     /gene_synonym="Tmem110"
                     /note="STIM-activating enhancer encoded by TMEM110;
                     transmembrane protein 110"
                     /codon_start=1
                     /product="store-operated calcium entry regulator STIMATE"
                     /protein_id="NP_942069.1"
                     /db_xref="GeneID:361110"
                     /db_xref="RGD:735152"
                     /translation="MQGPGGNVSRGLPGGPASTVASGAGRCESGALMHSFGIFLQGLL
                     GVVAFSTLMLKRFREPKHERRPWRIWFLDTSKQAIGMLFIHFANVYLADLTEEDPCSL
                     YLINFLLDATVGMLLIYVGVRAVGVLVEWQQWESLRFGEYGDPLQCGAWVGQCALYIV
                     IMIFEKSVVFIVLLILQWKKVALLNPIENPDLKLAIVMLIVPFFVNAFMFWVVDNFLM
                     RKGKTKAKLEERGANQDSRNGSKVRYRRAASHEESESEILISADDEMEESDAEEDLRR
                     PVKKKHRFGLPV"
     exon            250..298
                     /gene="Stimate"
                     /gene_synonym="Tmem110"
                     /inference="alignment:Splign:2.1.0"
     exon            299..394
                     /gene="Stimate"
                     /gene_synonym="Tmem110"
                     /inference="alignment:Splign:2.1.0"
     exon            395..516
                     /gene="Stimate"
                     /gene_synonym="Tmem110"
                     /inference="alignment:Splign:2.1.0"
     exon            517..629
                     /gene="Stimate"
                     /gene_synonym="Tmem110"
                     /inference="alignment:Splign:2.1.0"
     exon            630..707
                     /gene="Stimate"
                     /gene_synonym="Tmem110"
                     /inference="alignment:Splign:2.1.0"
     exon            708..857
                     /gene="Stimate"
                     /gene_synonym="Tmem110"
                     /inference="alignment:Splign:2.1.0"
     exon            858..1609
                     /gene="Stimate"
                     /gene_synonym="Tmem110"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cccagcttca ggtcccgggt cgcggctggg cagcgcggcc cgggctgcag cgaggccggc
       61 tgcccctcgc gccctcccgt caggccgcca tgcaaggccc gggagggaac gtgagccgcg
      121 gattgccggg cgggccggcc tccacggtcg cgtccggggc gggccgctgt gagagcggcg
      181 cgctcatgca cagtttcggc atcttcctgc aggggctgct cggcgtcgtg gccttcagca
      241 cattgatgct taaacgcttc cgagaaccaa agcatgaaag acggccatgg aggatatggt
      301 ttttagacac ttccaaacaa gccataggga tgctcttcat ccactttgca aacgtgtacc
      361 tagcggatct cactgaagag gacccttgct cactgtacct catcaacttc cttctggacg
      421 ccactgtagg catgctcctc atttatgtgg gcgtacgtgc cgtcggtgtg ttggtggagt
      481 ggcagcagtg ggagtccctg cgttttggag aatatggaga ccctctacag tgtggggcct
      541 gggtcgggca gtgtgccctt tacatcgtga tcatgatctt tgaaaagtcc gtggtcttca
      601 tcgtccttct catactccag tggaaaaagg tggccctgct gaatccaatt gagaaccctg
      661 acctgaagct ggccatcgtc atgctcatag tccccttctt tgtcaatgct ttcatgttct
      721 gggtagtgga caatttcctc atgagaaagg ggaagacgaa agctaaactc gaagaaagag
      781 gagccaacca ggactcaagg aacgggagca aggttcgcta ccgacgggcg gcatcccatg
      841 aggagtctga gtctgagatc ctgatctcgg ctgacgacga gatggaggag tctgacgccg
      901 aggaggacct ccggagacct gtgaagaaga aacatcgctt cgggctgccc gtatgacgca
      961 tttccacgct gcgggtgaca gtcctggggc ccagccctgc agcaacactg cttccctccc
     1021 ctctgccttc ctcttctacc tccactcctc ctgctgtctc tgcctgctct ccgcccgccc
     1081 cagactactg tgactgagaa gagggaagag gaccggtgcc tgaggggctg tgggcagctg
     1141 gagttcccgc tcagttgcac tacaaacact gaccaaatat gcaagcgaag agctttgttc
     1201 gttcgttgtc gtccctttgg ggggtcgtga gaccccctgt cctatgtctg accgggtggc
     1261 atggtggaag aaaacagagc acacacagaa ctgtggtggg ttctcctgcc gaggctgcag
     1321 gccttgtgga cacgcgacgt gcttggggtt aacagtcgct ggttgaccca ggttggaaca
     1381 ggaatggttt cttaactcaa aaaccggctt ttgtaactct ttccttctga agcctgtctc
     1441 acaggctgca acagtgttac tgttttttga gtacgtgtta gtttcctaca aagtacctat
     1501 gggtctaacg ggcaaacaga tttttaagtc ttccctatgc tgtctgactt ttatattttt
     1561 aagttatatt ttcatactat tgtatttaaa actcttttta atccccaaaa aaaaaaaaaa
     1621 aaaaaaaaaa aaaaaaa
//
