LOCUS       NM_001399278            3074 bp    mRNA    linear   ROD 22-SEP-2024
DEFINITION  Rattus norvegicus StAR-related lipid transfer domain containing 7
            (Stard7), mRNA; nuclear gene for mitochondrial product.
ACCESSION   NM_001399278 XM_006234917
VERSION     NM_001399278.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3074)
  AUTHORS   Morgenstern,M., Peikert,C.D., Lubbert,P., Suppanz,I., Klemm,C.,
            Alka,O., Steiert,C., Naumenko,N., Schendzielorz,A., Melchionda,L.,
            Muhlhauser,W.W.D., Knapp,B., Busch,J.D., Stiller,S.B.,
            Dannenmaier,S., Lindau,C., Licheva,M., Eickhorst,C., Galbusera,R.,
            Zerbes,R.M., Ryan,M.T., Kraft,C., Kozjak-Pavlovic,V., Drepper,F.,
            Dennerlein,S., Oeljeklaus,S., Pfanner,N., Wiedemann,N. and
            Warscheid,B.
  TITLE     Quantitative high-confidence human mitochondrial proteome and its
            dynamics in cellular context
  JOURNAL   Cell Metab 33 (12), 2464-2483 (2021)
   PUBMED   34800366
REFERENCE   2  (bases 1 to 3074)
  AUTHORS   Yang,L., Lewkowich,I., Apsley,K., Fritz,J.M., Wills-Karp,M. and
            Weaver,T.E.
  TITLE     Haploinsufficiency for Stard7 is associated with enhanced allergic
            responses in lung and skin
  JOURNAL   J Immunol 194 (12), 5635-5643 (2015)
   PUBMED   25980009
REFERENCE   3  (bases 1 to 3074)
  AUTHORS   Hasson,S.A., Kane,L.A., Yamano,K., Huang,C.H., Sliter,D.A.,
            Buehler,E., Wang,C., Heman-Ackah,S.M., Hessa,T., Guha,R.,
            Martin,S.E. and Youle,R.J.
  TITLE     High-content genome-wide RNAi screens identify regulators of parkin
            upstream of mitophagy
  JOURNAL   Nature 504 (7479), 291-295 (2013)
   PUBMED   24270810
REFERENCE   4  (bases 1 to 3074)
  AUTHORS   Horibata,Y. and Sugimoto,H.
  TITLE     StarD7 mediates the intracellular trafficking of
            phosphatidylcholine to mitochondria
  JOURNAL   J Biol Chem 285 (10), 7358-7365 (2010)
   PUBMED   20042613
  REMARK    GeneRIF: These results suggest that StarD7 facilitates the delivery
            of phosphatidylcholine to mitochondria in non-vesicular system.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On Jan 5, 2022 this sequence version replaced XM_006234917.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360172.661177.1,
                                           SRR26360194.1368583.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-652               JAXUCZ010000003.1  134940477-134941128
            653-861             JAXUCZ010000003.1  134953789-134953997
            862-911             JAXUCZ010000003.1  134954232-134954281
            912-1022            JAXUCZ010000003.1  134959884-134959994
            1023-1105           JAXUCZ010000003.1  134960073-134960155
            1106-1205           JAXUCZ010000003.1  134960953-134961052
            1206-1290           JAXUCZ010000003.1  134965652-134965736
            1291-3074           JAXUCZ010000003.1  134967357-134969140
FEATURES             Location/Qualifiers
     source          1..3074
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q36"
     gene            1..3074
                     /gene="Stard7"
                     /note="StAR-related lipid transfer domain containing 7"
                     /db_xref="GeneID:296128"
                     /db_xref="RGD:1307613"
     exon            1..652
                     /gene="Stard7"
                     /inference="alignment:Splign:2.1.0"
     CDS             354..1475
                     /gene="Stard7"
                     /note="START domain containing 7; StAR-related lipid
                     transfer (START) domain containing 7"
                     /codon_start=1
                     /product="stAR-related lipid transfer protein 7,
                     mitochondrial"
                     /protein_id="NP_001386207.1"
                     /db_xref="GeneID:296128"
                     /db_xref="RGD:1307613"
                     /translation="MFPRRPPATLAAWLAGARGGGLLAALANQCRFVTGLRVRRAQQI
                     AQLYGRLYSESSRCALLGRFWRRLRGRPGHASALMAALSGVFVWDEERIQEEELQRSI
                     NEMKRLEEVSNIFQSSGVESHPPETKCPAEGNEKSKDKEEPWEMVMDKKHFKLWRRPI
                     TGTHLYQYRVFGTYTDVTPRQFFNVQLDTEYRKKWDALVIKLEVIERDAVSGSEVLHW
                     VTHFPYPMYSRDYVYVRRYSVDQENNVMVLVSRAVEHPSVPESPEFVRVRSYESQMVI
                     RPHKSFDENGFDYLLTYSDNPQTVFPRYCVSWMVSSGMPDFLEKLHTATLKAKNMEIK
                     VKDYISAKPLEMSSEAKATASSPERKNEGSCGPARIEYA"
     exon            653..861
                     /gene="Stard7"
                     /inference="alignment:Splign:2.1.0"
     exon            862..911
                     /gene="Stard7"
                     /inference="alignment:Splign:2.1.0"
     exon            912..1022
                     /gene="Stard7"
                     /inference="alignment:Splign:2.1.0"
     exon            1023..1105
                     /gene="Stard7"
                     /inference="alignment:Splign:2.1.0"
     exon            1106..1205
                     /gene="Stard7"
                     /inference="alignment:Splign:2.1.0"
     exon            1206..1290
                     /gene="Stard7"
                     /inference="alignment:Splign:2.1.0"
     exon            1291..3074
                     /gene="Stard7"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggcgcgagag gcggacacag gcacacggga cctctcctgc tgcggcccgg gacgtccacc
       61 gctctgcttc ccgcgcacgg gacgcgggag tcccgcgagc ttccgccgta cccactgacg
      121 agcgggccgc caggaccaag aaggcctcgt gcagaggcgc tctcctcaga atccactcta
      181 cctcagcagc ttctgcagag aggcatgagg ggcggctcct ggcttctgga gcgtgaggtg
      241 ggctcggggt caaccagtta aggggacaac gcggacggcc cggcccggcc cgcctccccc
      301 tagcactttc tactccttgg cctagcggca ggcgcgggaa tccagaggcc gatatgttcc
      361 cgaggaggcc gccggccacc ctggccgcct ggctggcggg cgcgcggggc gggggccttc
      421 tggccgcgct ggccaatcag tgccgcttcg tgacgggcct gcgcgtgcgg cgagcgcagc
      481 agatcgcgca gctctacggc cgcctgtatt ccgagagctc gcgctgcgcc ctactcggac
      541 gcttctggcg ccggctgcgc ggccgccccg gtcatgcctc tgccttgatg gcggcgctct
      601 ccggtgtttt cgtatgggac gaggagagga tccaggagga ggagttgcag aggtccatta
      661 atgaaatgaa acggttggag gaagtgtcaa atatatttca gagttctgga gttgagagtc
      721 accctcccga aacaaagtgc ccagcagaag ggaatgaaaa gtcgaaagac aaagaagaac
      781 catgggaaat ggtgatggat aagaaacact tcaagctgtg gcggcgtcca attacaggca
      841 cccaccttta ccagtaccga gtttttggaa catacacaga tgtgacgccc cgacagttct
      901 tcaatgttca gctggataca gagtacagga aaaaatggga tgcccttgtg atcaagctag
      961 aggtgattga gagagatgcc gtcagtggtt ctgaggttct tcattgggta acacattttc
     1021 cttatccaat gtactctcgg gattatgttt atgttcggcg gtatagcgtg gatcaggaaa
     1081 acaatgtgat ggtcctggtg tcacgtgcag tggaacaccc cagtgtacca gagtctccag
     1141 agtttgtcag ggtcagatct tatgaatccc aaatggttat ccgtcctcac aagtcatttg
     1201 atgagaatgg ctttgactac ttactgacat acagtgacaa tccacaaact gtgttccctc
     1261 gatactgtgt cagttggatg gtttctagtg gcatgccaga tttcctggag aagctgcaca
     1321 cggccactct gaaagccaag aacatggaaa tcaaagtgaa ggactacatc tcggctaagc
     1381 ctctggaaat gagcagtgag gctaaggcca ctgcttcgtc ccccgagcgg aagaatgagg
     1441 gtagctgtgg cccggctcgg attgagtatg cttaaggctt ttggataagg aaagacaggc
     1501 acttccagcc cttccttgct ccttcagcac tgctgcagga caaggacaag tcacacatgt
     1561 tagaagacat ctgctgtaac tgtcattgca agagaattta gaactggagt tagatttcct
     1621 ctggagccct aatactcttt accaaacaga ggaccatgac atcgtggagc tgtcatgttc
     1681 tcaggccagc tgttgtgaaa tccagtatca tgctgaccta ctctggaaca gcctctcact
     1741 gtaggccaga aggggatgac tcctatccgc ctcctacaag cagcttcctt gctgacattc
     1801 caaatgccac catcggttat gcaatgctct ggatatcctt cagttctgta ggtcacttga
     1861 agagtggttg gccccgggtt ctcactaagt ggttttttga agtgctcttg gtaacagtcc
     1921 tgtggtggtg tgaacagttc tggctgagct aagtgccttg tcctcacctt gctttatctt
     1981 taaagacatg aagtttgtac caagggatcc ttccccctgc aaaataccat gacattgact
     2041 catctgatga aagcagcttt catcttaact ggcctttctg tgttcatggg ctgtgctcac
     2101 tggatcatgg cctctgccgt agccttagcc catatgccag gagcaccaga gacaaacccc
     2161 tctagacaat agctttctat ttgatgtcat cagtgttttg atagggtcag tggaaatgca
     2221 cacaaaacag tttacgtaaa aataaccaga tttcttttta acccttgtag caaatggagt
     2281 tgggaggttg agcacagctc gttccatagt cttgtttgtt ttggcactat tttcccacta
     2341 cagattgact gggctattct ggacagataa aggtagtgga taatggttgt gccattttct
     2401 cagagttttc aaaactgtaa gctgacatat gggccagcag atggagtctt gcccaatacc
     2461 aatatggtag ggatggggtt atgtgaccct ctggtcttct aaaccgtcaa tcctcagagc
     2521 tgacatagaa gtaatataca cagtttggat aagatcacaa ccaggtgata ggtgcctgac
     2581 cttgctggtt tctttatggt aaatagggat caagttttac atccttctct ctcttttcct
     2641 ggagttaata tagctgaaat tttctttgcc tgcttgctac ctaccctgtt gtggtgttga
     2701 aaaaggaaac taaacccaag gtgaacataa ccctttaact ttcttgttgc ctattgagtt
     2761 ctgtgccaag gaaacaacta actcccccag tgtttctgtc ctttcagttg ttggcagaga
     2821 gttgcatcga gaagccccaa tgtctttcat atatctgaat ttaacatctg tagttgaatg
     2881 cctgtgagtg tgagagcgat tgtaagcatg tatgtgtgtg tgagtgagct ggggctcagg
     2941 tactaagtag ttatggttgc ccttggtttt gtaatttaac tctgtacagt tacttgtgtc
     3001 atcataatga gtttgctcat aactgtgaca tttttatcaa gtgtgtgaat aaatacataa
     3061 aggttggtac agaa
//
