LOCUS       NM_001106159            2677 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus StAR-related lipid transfer domain containing 4
            (Stard4), mRNA.
ACCESSION   NM_001106159 XM_001060438 XM_214592
VERSION     NM_001106159.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2677)
  AUTHORS   Rodriguez-Agudo,D., Calderon-Dominguez,M., Ren,S., Marques,D.,
            Redford,K., Medina-Torres,M.A., Hylemon,P., Gil,G. and Pandak,W.M.
  TITLE     Subcellular localization and regulation of StarD4 protein in
            macrophages and fibroblasts
  JOURNAL   Biochim Biophys Acta 1811 (10), 597-606 (2011)
   PUBMED   21767660
REFERENCE   2  (bases 1 to 2677)
  AUTHORS   Rodriguez-Agudo,D., Ren,S., Wong,E., Marques,D., Redford,K.,
            Gil,G., Hylemon,P. and Pandak,W.M.
  TITLE     Intracellular cholesterol transporter StarD4 binds free cholesterol
            and increases cholesteryl ester formation
  JOURNAL   J Lipid Res 49 (7), 1409-1419 (2008)
   PUBMED   18403318
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000018.1 and CB547156.1.
            
            On Mar 29, 2013 this sequence version replaced NM_001106159.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643298.73160.1,
                                           SRR26643429.53605.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760494,
                                           SAMN09345238 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-53                JAXUCZ010000018.1  25104120-25104172   c
            54-357              CB547156.1         1-304
            358-460             JAXUCZ010000018.1  25096050-25096152   c
            461-575             JAXUCZ010000018.1  25095004-25095118   c
            576-2677            JAXUCZ010000018.1  25091255-25093356   c
FEATURES             Location/Qualifiers
     source          1..2677
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /map="18p12"
     gene            1..2677
                     /gene="Stard4"
                     /note="StAR-related lipid transfer domain containing 4"
                     /db_xref="GeneID:291699"
                     /db_xref="RGD:1309475"
     exon            1..168
                     /gene="Stard4"
                     /inference="alignment:Splign:2.1.0"
     CDS             131..805
                     /gene="Stard4"
                     /note="StAR-related lipid transfer (START) domain
                     containing 4"
                     /codon_start=1
                     /product="stAR-related lipid transfer protein 4"
                     /protein_id="NP_001099629.1"
                     /db_xref="GeneID:291699"
                     /db_xref="RGD:1309475"
                     /translation="MADPGSGWSQSSRKLKMEGLSDVASISTKLQNTLIQYHSIEEDQ
                     WRVAKKVKDVTVWRKPSEEFNGYLYKAQGVMDDVVNNVIDHIRPGPWRLDWDRLMTSL
                     DILEHFEENCCVMRYTTAGQLLNIISPREFVDFSYTVGYEEGLLSCGVSVEWSETRPE
                     FVRGYNHPCGWFCVPLKDSPNQSLLTGYIQTDLRGMIPQSAVDTAMASTLANFYSDLR
                     KALRKA"
     exon            169..283
                     /gene="Stard4"
                     /inference="alignment:Splign:2.1.0"
     exon            284..333
                     /gene="Stard4"
                     /inference="alignment:Splign:2.1.0"
     exon            334..460
                     /gene="Stard4"
                     /inference="alignment:Splign:2.1.0"
     exon            461..575
                     /gene="Stard4"
                     /inference="alignment:Splign:2.1.0"
     exon            576..2677
                     /gene="Stard4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggcgactgct tggcatcctc cgctaccggc ccggaaggag agaggtcggc cgaacgggat
       61 cgagcagtgc cgagcggggc cgaccgaggc tgagcgttcc ctggagctgc tccccgcaga
      121 ggggagagag atggctgacc ctgggagcgg atggtcacag agtagcagga agctcaaaat
      181 ggaaggactg tctgatgttg cctctatttc cacaaaactt cagaacactc tgatccagta
      241 tcacagcatt gaagaagatc agtggcgggt tgccaagaaa gtgaaagatg taaccgtttg
      301 gaggaagccc tcggaagagt tcaatgggta tctatataaa gcccaaggag ttatggatga
      361 cgtggtcaat aatgtgatag accacatacg cccagggccc tggcgcttgg actgggaccg
      421 gttaatgact tcactggata ttttggagca ctttgaagag aattgctgtg tgatgcgtta
      481 caccactgct gggcagcttt taaatattat ttccccgaga gagtttgttg atttctccta
      541 tactgtgggc tatgaagaag gacttttatc ctgtggggta agtgttgagt ggagtgagac
      601 gagaccagag tttgtccgtg gctataacca cccctgcggc tggttctgtg ttccactcaa
      661 agacagtcca aaccagagtc tcctgacagg ctacatccag acagacctgc gtggcatgat
      721 ccctcagtct gcggtagaca cagcaatggc aagcacgcta gccaacttct acagcgattt
      781 gcggaaggct ttgcgaaagg catagtgtgt tcaactcagt gccgtggttc actgactcta
      841 cttttctccc tctgctacgt gacgtgtaca agtcctcagt tcctgcctgc tgcggcctgt
      901 gggaacggac actggaggtg ttataggtgc catagtacaa tctcgttttc tattaaaagt
      961 aaatagctat gtaaataggg catttaaagt ttcctaaaag ttttatttgc accttgtttg
     1021 gttgtggaag tgtgtctgtg agtggaaagg gtgaaatccc gaggttcagg tcaggctaag
     1081 tgcagtctgt tcatacgggt caaataatac cttaggagag agctgctgtc tgcttggaaa
     1141 ttagagtgtg caaactcatg ctattcatgc tattttggag ctttttgaac attttgtaaa
     1201 attacacggg ttcccagtgt aaatgtgttt ctcttgctgt gttccgggag tttgccgata
     1261 gtttagacaa aaggaaaaag tcctccaaag tctgtaaaga taacgtgcac tgttcattga
     1321 cttataccat tttaagtatt agaaagagca caggtgacag gaatggccat tctagtaacc
     1381 ataggcacaa gtcagtgcag tttaattttg atatctaggt aacgttcttc tgcaaaacat
     1441 acttgtgtca ttatgtgcat tcatttgttc tggggatgac tgaaaacagc caggtatgca
     1501 ctggtgacat cacactgagc agtagctgtc actgaaggac gcagctagtg gtgtcccctc
     1561 atcaccagcc aaggccagtg ctaaaaagtc ggattcaatg actgtcctag acacacttcc
     1621 gtttttaaac tagcgctcac cccaaagcta cagactgcat gctaaaacgt tcagttctga
     1681 tgtaacttcc atctagaatt gtagcaaaag catcatgaga gtcagccagg ggcttagatg
     1741 tcccagtgac cagaatgagc tatgaatgga gctgtctcat gtgagcattc cttcatggct
     1801 gtcacactcc aaatcattct ttggcttttg aatatctacc tggtttattt gtgactctgt
     1861 gtcctccaca cccattgtgt gtttgtgtga gcactcagag ctcagtgttg tgtgtcaggt
     1921 ccgagtgtgt tattttttct gcacctccct ggccttacgc acttcccttt ccttcttctg
     1981 tttgtgttgc tggtgggtgg gtaggtttgc ctttttgatt tggtaaatga gttctggaaa
     2041 tacttgcagg caggaagcca cacgaaggcc tccagaagcc tccgatggtt cagctgtgtg
     2101 agggggtggt tcagtgcggg aggcccactc ttccctttgc atcagtttgt ttctccaagt
     2161 gtgaagtcac ttctttacgt tcgcgtgaca gtcaaaaggg agactggctt tcccttttaa
     2221 aagtgttttc ttgcaactgg tgataaaggt gcacagagag cagaggttca gtgtcggcgt
     2281 tcccggtgga tgagctcata gctctggaac tgaaatacca cgtccaggac ctgccagaag
     2341 cacttccccc agagggttgg ttctcagttt gttcatcgct aaggtccttg tctgaattta
     2401 tcgtgacttc tgaactgcta gatttcatca ttgctgttct cttcagcaat aggaaaagaa
     2461 aatgcagact gtccagggaa gattgctaag ttttaactgt tagatgtgtc ttctgtgact
     2521 ttacctgtct ctaatagtgt agagcagtct catatctccc attagtgtgt ccgtggtgta
     2581 aagggacgag agcgtgggta ccagcactgc agtgctgtca ggactctccc tgcctgagcc
     2641 ggcgtctctg aggatcccac tcctgcccag tctctga
//
