LOCUS       NM_001115048            1872 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus STAM binding protein-like 1 (Stambpl1), mRNA.
ACCESSION   NM_001115048 XM_001080490 XM_001080496 XM_001080504
VERSION     NM_001115048.2
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1872)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Nov 27, 2020 this sequence version replaced NM_001115048.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC158624.1, SRR26643293.8572.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-234               JAXUCZ010000001.1  241119740-241119973
            235-322             JAXUCZ010000001.1  241138202-241138289
            323-540             JAXUCZ010000001.1  241145218-241145435
            541-616             JAXUCZ010000001.1  241147619-241147694
            617-712             JAXUCZ010000001.1  241148703-241148798
            713-1070            JAXUCZ010000001.1  241149814-241150171
            1071-1195           JAXUCZ010000001.1  241151020-241151144
            1196-1333           JAXUCZ010000001.1  241152268-241152405
            1334-1446           JAXUCZ010000001.1  241156602-241156714
            1447-1546           JAXUCZ010000001.1  241157367-241157466
            1547-1872           JAXUCZ010000001.1  241157900-241158225
FEATURES             Location/Qualifiers
     source          1..1872
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q52"
     gene            1..1872
                     /gene="Stambpl1"
                     /note="STAM binding protein-like 1"
                     /db_xref="GeneID:687696"
                     /db_xref="RGD:1583011"
     exon            1..234
                     /gene="Stambpl1"
                     /inference="alignment:Splign:2.1.0"
     exon            235..322
                     /gene="Stambpl1"
                     /inference="alignment:Splign:2.1.0"
     CDS             293..1603
                     /gene="Stambpl1"
                     /EC_number="3.1.2.15"
                     /codon_start=1
                     /product="AMSH-like protease"
                     /protein_id="NP_001108520.1"
                     /db_xref="GeneID:687696"
                     /db_xref="RGD:1583011"
                     /translation="MEQPFTVNSLKKLAAMPDHTDVSLSPEERVRALSKLGCNISINE
                     DITPRRYFRSGVEMERMASVYLEEGNLENAFVLYNKFITLFVEKLPSHRDYQQCAVPE
                     KQDIMKKLKEIAFPRTDELKTDLLRKYNIEYQEYLQSKNKYKAEILKKLEHQRLIEAE
                     RQRIAQMRQQQLESEQFLFFEDQLKKQELARGQTRGQDSLVLSEQTDGSGLSCFSTHQ
                     NNSLRNVFADHPQKSDVCDLANYSPPVNRALKPAATLSAVQNLVVEGLRCVVLSRDLC
                     HKFLLLADSNTVRGIETCGILCGKLTHNEFTITHVVVPKQSAGPDYCDVENVEELFSV
                     QDQHGLLTLGWIHTHPTQTAFLSSVDLHTHCSYQLMLPEAIAIVCSPKHKDTGIFRLT
                     NAGMLEVSTCKKKGFHPHTKDPKLFSICSHVLVKDIKTTVLDLR"
     exon            323..540
                     /gene="Stambpl1"
                     /inference="alignment:Splign:2.1.0"
     exon            541..616
                     /gene="Stambpl1"
                     /inference="alignment:Splign:2.1.0"
     exon            617..712
                     /gene="Stambpl1"
                     /inference="alignment:Splign:2.1.0"
     exon            713..1070
                     /gene="Stambpl1"
                     /inference="alignment:Splign:2.1.0"
     exon            1071..1195
                     /gene="Stambpl1"
                     /inference="alignment:Splign:2.1.0"
     exon            1196..1333
                     /gene="Stambpl1"
                     /inference="alignment:Splign:2.1.0"
     exon            1334..1446
                     /gene="Stambpl1"
                     /inference="alignment:Splign:2.1.0"
     exon            1447..1546
                     /gene="Stambpl1"
                     /inference="alignment:Splign:2.1.0"
     exon            1547..1872
                     /gene="Stambpl1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cagtgatgaa catatttcca tttttttatt cagcttgtgc agaatgttct gaagaagaca
       61 gggagagtaa actctagctg ttctttggct tccttaagta gcttcatcta gttctcagat
      121 ggggcgatgc ctgaggtgct gaggagtgag ttgtcagcgc cttctgatct tctctacgtg
      181 gatcttgtcc gccttcactg acttaagcac cttcacaaca ctgcaccgag ccttatgaag
      241 tgactgtgaa ggaagagtga gcaccttgct tttgcaggaa ggacaggaca gcatggagca
      301 gccatttacg gtgaattcac tgaaaaagtt agctgctatg cctgaccata cagatgtttc
      361 tctaagtcca gaggagcggg tccgtgccct aagcaagctt ggttgtaata tctccattaa
      421 tgaagacatc accccacgcc gttacttcag gtccggagtg gaaatggaaa gaatggcgtc
      481 tgtgtatttg gaagaaggga acctggaaaa tgcctttgtt ctttacaaca aatttataac
      541 attatttgta gaaaaacttc ccagccatcg agattaccag cagtgtgcag ttcccgagaa
      601 gcaggacatc atgaagaaac tgaaggagat tgcgttccca aggacggacg aattgaaaac
      661 ggacctgcta aggaaatata acatagaata ccaagagtat ttacaaagta aaaacaaata
      721 taaagccgaa attctcaaaa agttggaaca tcagagactg atagaggcag agcgccagcg
      781 aatcgctcag atgcgccagc agcagctgga gtctgaacag ttcctgtttt tcgaagatca
      841 actcaagaag caggagttgg ctcggggcca gactcgaggt caggactctc tggtgctgtc
      901 tgagcagact gacggaagtg ggctgtcctg tttttccacc caccagaaca attcactgag
      961 gaacgtattt gcagaccatc ctcagaaaag tgatgtttgc gatctcgcta actactctcc
     1021 tccagtgaac agggccctaa agccagcggc caccctgagt gctgttcaga atttagtggt
     1081 tgaaggactg aggtgtgtag ttttgtcaag agatctttgc cacaaatttc tgctgctggc
     1141 tgactctaac acagtgagag gaatagaaac ctgtgggatc ctctgtggaa aactgacaca
     1201 taatgaattc accattactc atgtggtggt gccaaagcag tctgctggcc cagactattg
     1261 cgacgtggag aatgtagaag aattattcag tgttcaggat caacatggtc tcctcacgct
     1321 gggatggatt cacacacacc ccacgcaaac ggcattcctg tccagtgtgg atctccacac
     1381 tcactgctcc tatcagctta tgttgccaga ggccattgcc atcgtgtgtt ccccaaagca
     1441 taaagacacc ggcattttca ggctcaccaa cgctggcatg cttgaggttt ctacttgcaa
     1501 gaagaagggt ttccatcctc acaccaagga ccccaagctg ttcagtatat gcagccatgt
     1561 gttagtgaaa gacataaaga caactgtgtt ggacctgagg tgacatgtcc gaaatgtaag
     1621 accatctgta ctggacacct gccagggaca tgtgtggctg ccgaatttct tatgatgttt
     1681 tcagaagtga ccgatatttt atatttatat attttagacc agaactttga tatttattgt
     1741 tcttgcacat tttgaagttt cctttttttt gggggtgggg gggtgtgtct caaaagagac
     1801 cacatggtgt tcagtctata cctgtgaata tacccaaatg atgccatcag aaataaattg
     1861 tgctgcagat aa
//
