LOCUS       XM_343491               2930 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus SH3 and cysteine rich domain (Stac),
            transcript variant X1, mRNA.
ACCESSION   XM_343491
VERSION     XM_343491.9
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 19, 2024 this sequence was replaced by
            NM_001108784.1.
            
            On Jan 21, 2021 this sequence version replaced XM_343491.8.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2930
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2930
                     /gene="Stac"
                     /note="SH3 and cysteine rich domain; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 7
                     ESTs, 5 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 17 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:363152"
                     /db_xref="RGD:1305745"
     CDS             482..1693
                     /gene="Stac"
                     /codon_start=1
                     /product="SH3 and cysteine-rich domain-containing protein
                     isoform X1"
                     /protein_id="XP_343492.4"
                     /db_xref="GeneID:363152"
                     /db_xref="RGD:1305745"
                     /translation="MIPPSGAREDSGDGLTREATGTEQPPSPASTSSLESKLQKLKRS
                     LSFKTKSLRSKSADNFFPRTNSDVKPQADLLAKASPGPSPIPIPGSPASMPTKAGLHP
                     GSNSKVHAFQEHVFKKPTFCDVCNHMIVGTHAKHGLRCGACKMSIHHKCADGLAPQRC
                     MGKLPKGFRRYYSSPLLIHEQFGCIKEVMPIACGNKVDPVYEALRFGTSLAQRTKKSS
                     SGSGSDSPPRTSTSELVEVPEEADGPGDSSDIRPRSNSVFTYPENGTDDFRDQVKTIN
                     HQGPLSKDPLQMNTYVALYRFIPQENEDLEMRPGDMITLLEDSNEDWWKGKIQDRVGF
                     FPANFVQRVEEHEKIYRCVRTFIGCKDQGQITLKENQICVTSEEERDGFIRVLSGKKR
                     GLVPLDVLVDV"
ORIGIN      
        1 tgagggggtc gctgaaggtg gcccatagta cttgtttgta ctcgctttct gttccttggg
       61 gtttttgctg agtgttttcc ttagaacatc accagaccca gcgcgggcgc tcagagctga
      121 tctcccacac tgtcggagtg ggcgcggccc cctcccgccc tgggttcccc gcacgaccac
      181 gcagccccgc cccgagccgc cgcctcccgt cctcggaggg gccagcccgg gcccacccgc
      241 ccgctgcggt gggcggcagt cacgactaga ggcgcgcaat ctccagcgag gtggccacag
      301 gcgctgcgcg gggcggggcg gaggcccggg aggtgggctg gacctggcca ggcgaggccc
      361 cagggcgcac gccgccgcct ggcacgatgg acatcccggg gacacggcac tgagcgagcg
      421 agcaagaagt cgagcgaacc tgcggttccc ccagaagccc aacacagttc ccgcggccaa
      481 gatgatccct ccaagtggcg cccgcgagga cagcggagac ggactgaccc gggaggcaac
      541 cggcacagag cagccgccct ctcctgcgtc caccagcagc ctggaatcca agctccagaa
      601 actaaaacgg tcactttctt tcaagaccaa gagcttgcgg agcaaaagtg ccgacaactt
      661 cttcccaagg accaacagtg atgtgaaacc acaagcagac ctgctggcca aggctagccc
      721 aggccccagc ccaataccca tccctggaag cccagcatcc atgcccacca aggctggcct
      781 gcaccccggc agcaacagca aggtccacgc ctttcaggag catgtcttta agaagcccac
      841 cttctgtgat gtctgcaacc acatgatcgt gggaacacat gctaagcacg gactacgctg
      901 tggagcctgc aagatgagca ttcatcacaa gtgtgcagac ggcctggcac cccagcggtg
      961 catgggcaag ttgccaaaag gattccggcg ttactacagc tcccccttgc tcattcacga
     1021 acagtttgga tgcattaaag aagttatgcc cattgcttgt ggcaataaag tggacccagt
     1081 gtatgaagcc ctccgatttg gcacatccct ggcccagaga acaaagaaga gcagctcagg
     1141 cagtggttct gactcacccc ccagaacctc gacttcagag ctggtagagg ttcctgaaga
     1201 ggctgatggg ccaggagact cgtctgacat caggccacgg agcaacagtg tgtttacata
     1261 tccggaaaat ggcaccgatg acttcagaga tcaagtaaag accataaacc accagggacc
     1321 tctttccaaa gacccattac agatgaacac ctacgttgcc ttgtacagat ttataccaca
     1381 ggagaatgaa gacttggaaa tgaggccagg agacatgatc actctcctag aagactccaa
     1441 tgaagactgg tggaaaggaa agattcagga cagggttggt ttctttccag ccaactttgt
     1501 tcagagagta gaagagcatg agaagattta taggtgtgtc cggaccttca ttggctgcaa
     1561 ggaccagggg cagataacac tgaaagagaa tcagatctgt gtgacctctg aggaagaacg
     1621 ggacggcttc atcagagtcc tcagtgggaa gaagagaggc ctcgtcccat tggatgtact
     1681 ggtagacgtg tgactgtagc agaccctccc agtgcaggag gccagcgctg ctgatctctc
     1741 tgtgtccacc cagaggagca gctgcactga tgggtgccca gaaaacaggg agacttgaag
     1801 atttgagagt gtgctagcaa tctggaagca ggccaactgc acagcacacc aaggctgcct
     1861 gagagcagca tcccagagct gagggctgct agcgggagta ggtgggctgt agctaaggct
     1921 gccccaggac tcagctccct tcctgctcac ctgtgcaagg ctggagtctg ctccaggtca
     1981 tggtgtgctc ctgatgagaa gtttggagca gagtagccaa gcgttactct ggttctggat
     2041 tactggtccc cgtgctggcc aatcaacctc atcacgactc ttgcaaagaa tcaagaaatc
     2101 caacctcccc gctcccaaca ccccagggct cactccagct cctgctcagt ttgtgtcttg
     2161 gctggcagga ctatcctttc tttctctccc attcttcaag cacatcctag gcagggccaa
     2221 accagcaagg taccgaatgc aaagatctga cttacctaca gatttcgaag gagggcagcc
     2281 ttgctacttc agcgactcga aagtgacagg gcaaggtcca aggcacagaa tcaagtagca
     2341 gcaagtagtg ggtgtgggga caaggaagga gtccttatac attgggatcg tacagccatt
     2401 ttagttgggt ggtttttttc ccccagagca ggtggggctg ggagtgggaa gtaggaaaga
     2461 gtctccgttt tcatttcata tcctctttat caggagcagc ccttctccgt ttgtgcaacc
     2521 tgtaggactg cactgtggtg gacgagtcca ccgtgcaggg atccagggga gaggggaaca
     2581 ccactgagga aaacatctta gtataaatgt ggccaactta gactccattc ttctccaggg
     2641 caatggtttc cgctcccaca ggtgtgaagt gaaaaggaca ggaaatgctt ctttgtcttt
     2701 gtgcagagga agcttggggc tttgctcaca ccacctgggg atattgctct ccacctctac
     2761 caatgtttac aagaacatac cacactgcga tgccttcctc ccagaccctg tcccagcatt
     2821 cagacctgct tcctggcagt cactgacatg tctaaatgat gtgactttgg gattcttcgt
     2881 tgctttgatt tattttgcca ctgagcaata aaatcattag aaccatctca
//
