LOCUS       XM_008771053            8121 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus stabilin 1 (Stab1), transcript variant
            X1, mRNA.
ACCESSION   XM_008771053
VERSION     XM_008771053.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051351.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_008771053.4.
            
            On Jan 21, 2021 this sequence version replaced XM_008771053.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8121
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..8121
                     /gene="Stab1"
                     /note="stabilin 1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 21 ESTs, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 96 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:100363145"
                     /db_xref="RGD:2324745"
     CDS             113..8005
                     /gene="Stab1"
                     /codon_start=1
                     /product="stabilin-1 isoform X1"
                     /protein_id="XP_008769275.1"
                     /db_xref="GeneID:100363145"
                     /db_xref="RGD:2324745"
                     /translation="MAEPRILLLLCILVLCLAGSGFIRGQTVRSKRCDIHTKFITHTP
                     CTACAAIRRRLCPSGWSRNFPEKILLDCRYELQLRGSVVSLSGCSQECWKDVVQKACC
                     PGYWGSQCYECPGGPATPCSGHGTCLDGIGGNGTCVCQENFSGSACQDCRDPNRFGPD
                     CQSVCNCVHGVCSRGPQGNGSCQCFAGYTGPHCDQELPVCQSLRCPQNSQCSAEAPAC
                     KCLPGYIQQDNACLREPLDPCQPSPCSSLARCSVTPSGQPQCHCPENYHGDGKVCLPQ
                     DPCLTNFGGCPSNSTFCLYRAPGKATCMCWPGMTSINNDASEGCHVSCKPHSCDKSAT
                     CQVTPDRKTSCVCKSDEVGDGYACYGHLLHEVQRANQIGLVLLRLRVAIAMLEQGCQE
                     ILTTSGPFTVLVPSMFSVSAISSSNMNATLAQQLCRQHIIPGEHILENIGPSNTRRWW
                     TLAGQEITVTFKNLRYSYKYEDQPQQFSIQKANYIAANGVFHTVTALRWQLPPPLPGD
                     PKKTVGQILASTEAFTRFETILENCGLPAMLDGPGPFTVFAPSNEAVDSLRDGRLIYL
                     FTAGLSKLQELVRYHIYNHGQLTVEKLISKGRFLTMANQVLTVNISEEGRILLGPEGV
                     PVRRVDVPAANGVIHMLEGILLPPTILPILPKHCDEEQHQTVLGSCVDCQALNTSICP
                     PNSVKMDIFPKECVYTHDPAGLNVLKKGCAEYCNQTITKRGCCKGFFGPDCTQCPGGF
                     SNPCYGKGNCSDGVQGNGACLCFPDYKGIACHICSNPNKHGEQCQEDCGCVHGLCDNR
                     PGSGGVCQQGTCAPGFQGRFCNESMGNCGSLGLAQPCHPDAHCVIQEGVARCVCHDGF
                     EGNGFSCKRSSPCSHPDRGGCSENAECVPGDLGTHQCICHKGWSGDGRICVAIDECGL
                     DTRGGCHADALCSYVGPGQSRCTCKLGFAGDGYECSPIDPCRVGNGGCHGLATCKAVG
                     GGQRVCTCPPHFGGDGFSCYGDIIQELEANAHFSAFSQWFKNSSITLPADGKLTALVP
                     SESAIRRLRPEDQAFWLQPKTLPELVRWGELGRKGHGGDSGWDLDPSQTMLREFPWLT
                     KVGEPRLKELCNLVQSPPPPTLLLRAHFLQGAFSEEELARLSGQQVATLSATTHWQIH
                     NTSGRVQVQNATVDVPDLLATNGVLHIISQVLLPPRGDMQTGPGLLQQLDSVPAFRLF
                     GEQLKHHKLVAQIEAAKAYTIFVPTNHSLETQGNKSILGIDIVRHHVILGEALSVEVL
                     RKGGHRNSLLGPAHWLVFYNHSGQPEVNHVPLEGPLLEAPGSALFGLSGILAVGSSRC
                     LHSHAEALREKCVNCTRKFRCTQGFQLQDTPRKSCVYRSGLSFSRGCSYTCAKKIQVP
                     DCCPGFFGTLCEPCPGGLGGVCSGHGQCQDRFLGNGECRCQEGFHGTACEMCELGRYG
                     PTCSGVCDCDHGLCQEGLRGNGSCICNVGWQGLRCDQKITDRQCPKKCDPNANCIQDS
                     AGIPVCVCAAGYSGNGSYCSEVDPCTSGHGGCSPYANCTKVAPGQRTCTCLDGYTGDG
                     ELCQEINSCLVHNGGCHVNAECIPTGPQQVSCNCREGYSGDGIQSCKLLDPCSQNNGG
                     CSPYAVCKSTGDGQRTCSCDSTHTVGDGITCHGRVGLELLRNKYASFFSLHLLEYKEL
                     KGDGPFTIFVPHSDLISNMSQGELARMRAHRQLVFRYHVLGCRKLGSQELLDQGYVTA
                     LSGHTLRISEREGSIYLNDFARVVSSDHEAVNGVLHFIDRVLLPPDVLHWEADTIPIP
                     RRNVTAAAESFQYKIFSRLLTVAGLLPMLQDASHRPFTMLWPTDSALEALSPDRKNWL
                     YHEDHRDKLAAILRGHVIRNIEASASDLPNLGQLRTMHGNTISFSCGLARPGELMVGE
                     NEARIVQRYLLFEGGLAYGIDQLLEPPDLGARCDRFEPQPLQTKTCSICGLEPPCPRG
                     SREQGSPEACWRHYSKFWATPLHSITMRGGSWITPSFWNRNHMGRGCHRKCVTTVWKP
                     SCCPGHYGADCHACPGGPRSPCSGHGVCLDGISGSGQCNCHPGFAGTACELCAPGAFG
                     PQCQACRCAPHGRCDEGLGGSGSCFCDEGWTGPRCDVQLELQPVCTPPCAPQAVCRVG
                     NSCECSLGYEGDGRVCTVADLCQKGHGGCSKHANCSQVGTVVTCTCLPAYEGDGWSCR
                     ARNPCLDGHRGGCSEHADCFNTGPNTRRCECHTGYVGDGLQCLEELEPPVDRCLAESS
                     PCHTDALCTDLHFQEKQAGVFHIQATSGPYGLTFSEAKEACEDQGADLASLPQLSAAQ
                     QLGFHVCFLGWLANGSAAHPVVTPAADCGNNRVGVISLGVRKNLSERWDAYCYRVRDV
                     ACQCRVGFVGDGISTCNGKLLDVLAATADFSTFYGMLLGYANATQRGLDFMDFLEDEL
                     IYKTLFVPVNEGFLDNMTLSGPDLELHASNATFLSANASQGTLLPAHSGLSLFISDTG
                     PDNISLVPLAPGAVVVSHVMVWDIMAFNGVIHALASPLLTPPQPRAVLGSEPQPVALS
                     LGVVITCGTLLGLVAGALYLRARRKAPGFSFSVFQAEDNADDDFSPWQEGTSPTLVSV
                     PNPVFGSSDIFCEPFDDSVLEEDFPDTQRVLKVK"
ORIGIN      
        1 ccaccctgtc cttccccttt cctcatgcct gcctctcgga gctcacgaac ttcccactgt
       61 tacaatcact gtctccacac tacttttgtc tcggacagtg gacctgcctg ctatggccga
      121 gccccgaatc ctccttttgc tctgcatcct ggtcctctgc ctggcaggct ccggtttcat
      181 cagagggcag acggtgcggt ctaaacgctg tgacatccac accaagttca tcactcacac
      241 cccctgcacc gcatgtgccg caattaggag gcggttatgt ccctcgggct ggtctcggaa
      301 tttcccagag aagatacttc tggactgtcg ctatgagttg cagctcaggg gctctgtggt
      361 atccttaagt ggctgtagcc aggagtgctg gaaggacgtg gtacagaagg cctgctgccc
      421 cggctactgg ggatcccagt gctatgagtg ccccggtggt ccggcgacac catgtagtgg
      481 ccacgggacc tgcctggatg gcataggtgg aaatggaacc tgtgtgtgtc aggagaactt
      541 tagcggctca gcctgccaag actgccgaga tcccaacaga tttgggcctg actgccaatc
      601 agtgtgcaac tgtgtgcatg gcgtgtgcag ccgtgggcca caagggaatg gaagctgcca
      661 gtgttttgct ggatacaccg gtcctcactg tgaccaagag ctcccagtct gccagagcct
      721 gagatgcccc cagaattccc agtgctccgc agaggcaccc gcctgcaaat gcctgcctgg
      781 atacattcag caagacaatg cgtgtcttcg tgagcctctt gacccctgtc agccatctcc
      841 ttgctcctca ctggcccgat gttcagtgac tcccagcggg cagcctcagt gtcactgccc
      901 agagaattac cacggtgatg ggaaagtgtg tctgccccag gacccatgcc tcaccaactt
      961 tggtggctgc cccagcaact ctaccttctg cctataccgt gctccaggca aggccacctg
     1021 catgtgctgg ccaggtatga caagcattaa caacgatgct tctgagggat gccatgtctc
     1081 atgcaaacca cattcctgtg acaaatcagc cacctgtcag gtgacccctg atagaaagac
     1141 cagctgtgtg tgcaaaagtg atgaggtggg tgacggctac gcctgctacg gacatctgct
     1201 ccacgaggtt cagagggcca atcagattgg cctggtgttg ctgcggttaa gagtggccat
     1261 tgccatgctg gagcagggct gccaggagat ccttaccaca tcgggcccat tcaccgttct
     1321 ggtgccatcc atgttctcgg tctccgccat ctcctccagt aacatgaatg caacacttgc
     1381 ccagcagctc tgcagacaac atatcatccc aggagagcac atcttggaga atatagggcc
     1441 ctcaaataca cgcaggtggt ggacactggc tggccaggag atcaccgtca cgttcaaaaa
     1501 cctgagatat tcctacaagt acgaggacca gccccagcag ttcagtatcc agaaggccaa
     1561 ctacatagct gctaacgggg tcttccatac ggtcactgcc ctacgatggc agcttccacc
     1621 cccacttcca ggggacccca agaaaaccgt tggccagata ctcgcttcga cggaggcttt
     1681 cacacggttc gaaactatcc tggagaactg tgggctgcca gccatgctgg atgggcctgg
     1741 acccttcaca gtctttgccc caagcaacga agctgtggac agccttcggg atggccgact
     1801 gatctacctt ttcacagcag gcctttccaa acttcaggag ctggtacggt accacatcta
     1861 caatcatggc cagctgacag ttgagaagct catctctaag ggacgtttcc tcaccatggc
     1921 caaccaggtc ctgactgtga atatctctga agagggacgc atcctgctgg gacccgaggg
     1981 cgtccccgtg cggagggtcg atgtgccggc tgccaacggt gtgatacaca tgctggaagg
     2041 catcctgctg ccccccacca tcttgcccat ccttcccaag cactgcgatg aagagcagca
     2101 ccagactgtg ctgggttctt gtgtggactg ccaagccttg aacaccagta tatgcccccc
     2161 aaacagtgtg aaaatggaca tcttccccaa ggagtgtgtg tatacgcacg acccagctgg
     2221 gctcaacgtc ctgaagaaag gctgtgctga gtactgcaac cagaccatca caaaacgcgg
     2281 ctgctgcaaa gggttctttg ggcccgactg cacacagtgt cctgggggct tttccaaccc
     2341 ctgctacggc aaaggcaact gcagcgatgg ggttcagggg aatggagcct gcctctgctt
     2401 tccagactac aaggggatcg cctgccatat ttgttccaac ccaaacaagc atggtgaaca
     2461 gtgccaggag gactgtggtt gtgtccatgg cctgtgtgac aaccgtcctg gcagtggagg
     2521 ggtgtgccag cagggtacat gtgcccctgg cttccaaggc cgcttctgca atgagtccat
     2581 gggaaactgt ggatccctag ggctggccca gccctgccac ccagacgctc actgtgttat
     2641 tcaggagggc gtcgccaggt gtgtctgcca cgatggtttt gaaggtaatg gtttctcctg
     2701 caaacgcagc agtccttgct ctcacccaga ccgcggtggc tgctccgaga atgctgaatg
     2761 tgtccctgga gacttgggta cccaccaatg catttgccac aaaggctgga gtggggatgg
     2821 ccgcatctgt gtggccattg atgaatgcgg gctggatact cgaggtggct gccatgcgga
     2881 tgctctttgc agctatgtgg ggcctggaca gagccgatgc acatgtaagc tgggcttcgc
     2941 tggagacggt tacgagtgca gccccatcga cccctgtcgc gtaggcaatg ggggctgcca
     3001 tggcctggct acctgcaagg cagtgggagg aggccagcgg gtttgcacgt gcccccctca
     3061 ttttggtggt gatggcttca gttgctatgg agacatcatc caggaactgg aggcaaatgc
     3121 ccacttctct gccttctccc agtggtttaa gaactcgagc atcactctcc cggctgacgg
     3181 taaactcaca gccctggtgc cctcggaatc tgccatccgc agactgcgcc ccgaggacca
     3241 ggccttctgg ttgcagccaa agacgctgcc agaactggtc aggtggggag agctgggaag
     3301 gaagggccac ggaggggatt ctgggtggga cttggaccct tctcagacaa tgttaagaga
     3361 atttccatgg ctcacgaaag tgggagagcc caggctgaag gaactttgta atctggtcca
     3421 atccccacca cccccaactc ttctccttag ggcccacttt ctccagggtg cgttctcaga
     3481 ggaggagctg gcccggttaa gtgggcaaca ggtggccaca ctgagtgcca cgacacactg
     3541 gcagattcac aacaccagtg ggagagtcca ggtgcagaat gccactgtgg atgtacccga
     3601 cctcctcgcc accaatggtg tcctacatat tattagccag gtcttgttgc ctccgagagg
     3661 tgacatgcag actgggccgg ggttgctgca gcaactagat agtgtgcctg ccttccgcct
     3721 cttcggggaa cagctaaagc accacaaact ggtagcccaa atagaggctg ccaaagccta
     3781 caccatcttc gtgcccacaa atcactctct ggagacccag ggcaacaaga gtatcctggg
     3841 catagacata gtgcgacatc acgtgatcct cggggaggca ctgtccgtgg aggtcctgcg
     3901 gaaaggggga caccgcaact ccctcctggg ccctgcccac tggctggttt tctacaatca
     3961 tagtggccag cctgaggtga accacgtgcc gctggagggc cctttgctgg aagccccagg
     4021 cagtgccctc tttggactgt cggggatctt ggcagtgggc tctagccgtt gcctgcacag
     4081 ccacgcggag gctcttcggg agaaatgtgt aaactgcacc cggaaattcc gctgtactca
     4141 aggcttccag ctgcaggaca caccaaggaa gagctgtgtc tacagatctg ggttatcttt
     4201 ctcccggggc tgttcctaca catgtgccaa gaagatccag gtgcccgact gctgcccagg
     4261 cttctttggc accctctgtg agccatgccc agggggtcta ggtggggtgt gctcaggcca
     4321 tgggcagtgc caagacaggt tcctgggcaa tggggaatgt cgctgccaag agggattcca
     4381 tggaacggcc tgtgagatgt gtgagctggg ccgctatggg cccacctgtt ctggagtatg
     4441 cgactgtgac cacgggctgt gccaggaggg gctgcgcggc aatggaagct gtatctgtaa
     4501 tgtgggctgg cagggtctcc gctgtgacca gaaaatcact gatcgtcaat gtcccaagaa
     4561 gtgcgatccc aatgccaact gcatacagga ctctgctgga atccccgtgt gtgtctgtgc
     4621 tgcaggatac tcaggcaatg gcagttactg ctcagaggtg gatccctgta cctctggcca
     4681 tgggggctgc tcgccctatg ccaactgtac caaggtggct ccgggacaac ggacgtgcac
     4741 ctgcctggat ggctacacgg gtgacgggga gttgtgccag gaaataaaca gctgtctcgt
     4801 ccacaatggg ggctgtcatg tgaacgctga gtgtatcccc acaggccccc agcaggtgtc
     4861 ctgcaactgc cgtgagggct acagtggcga tggcattcag tcttgcaagc tcctggatcc
     4921 ttgctcccag aacaatggag gctgcagccc ttatgctgtg tgcaaaagca caggagacgg
     4981 acagaggaca tgttcctgtg attcaactca tactgtgggg gacggcatca cctgtcatgg
     5041 gcgagttgga ctggagctcc tacggaacaa gtatgcctcg ttcttcagcc tccacctcct
     5101 ggaatacaag gagctcaaag gcgatgggcc attcaccatc ttcgtgccac attctgattt
     5161 aataagcaac atgtcccagg gtgagctggc gaggatgcgg gctcaccgtc agctcgtgtt
     5221 tcgctaccac gtgcttggct gccggaagct ggggagccaa gagctgctgg accagggata
     5281 tgtcaccgca ctgtctggac acactctgcg cattagtgag agggagggca gcatttatct
     5341 caatgacttt gctcgggtgg taagcagcga tcacgaggca gtgaacggtg tcctgcactt
     5401 catcgaccgt gtcctgctgc cgccagatgt gctacactgg gaggctgata ctatcccaat
     5461 ccctcggaga aatgtcactg ctgccgctga aagcttccaa tacaagatct ttagccgact
     5521 gctgacggtg gctggcctcc tgcccatgct tcaagatgca tcccatcgtc ccttcacgat
     5581 gctgtggccc acagattctg ccctggaagc cctgtctcct gatcggaaga actggctcta
     5641 ccatgaggac caccgtgaca aactggcggc cattttgcgt ggtcatgtga ttcgcaacat
     5701 tgaggcctcg gcatctgatc tacccaacct gggccaactc cgaaccatgc acggaaacac
     5761 catctctttc tcctgcggtc ttgcccggcc cggcgaactc atggtaggtg agaacgaggc
     5821 ccgcattgtg caacggtact tgctgtttga agggggcctg gcttatggca tcgaccagct
     5881 gctggagcca cctgaccttg gtgcccgctg tgatcgcttt gaaccccagc cgcttcaaac
     5941 gaagacttgc agcatctgtg gactggagcc accctgtcct cggggctcac gggagcaggg
     6001 cagccctgag gcctgctggc gtcactactc caagttctgg gcaactcctc tgcactccat
     6061 aaccatgcgt ggaggttcct ggataacgcc tagtttttgg aaccgcaacc acatgggtag
     6121 gggttgccac cgcaaatgtg tcaccaccgt ctggaagcct agctgttgcc ctggtcacta
     6181 tggcgctgac tgccatgctt gccccggtgg tcccagaagc ccctgcagtg gccacggtgt
     6241 gtgcctggat ggcataagcg gaagtgggca gtgcaattgt catccgggtt ttgccgggac
     6301 agcgtgtgaa ctctgtgccc cgggtgcctt cggaccccag tgccaagcat gccgctgtgc
     6361 cccacatggg cgttgcgatg aaggtctcgg gggctctggc tcctgcttct gcgatgaggg
     6421 ctggactggg ccacgctgtg atgtgcagct ggagttgcag cccgtgtgca ccccgccctg
     6481 tgcaccccag gccgtgtgcc gtgtgggcaa cagctgtgag tgcagcctgg gctatgaagg
     6541 ggacggccgt gtgtgcacag tggcagacct gtgccagaag gggcatggtg gctgcagtaa
     6601 gcacgccaac tgcagccagg tggggacagt ggtcacctgt acctgcctgc ctgcctatga
     6661 gggtgacggt tggagttgcc gagctcgcaa cccctgcttg gatggccacc gtggaggttg
     6721 cagtgagcat gccgactgct ttaacaccgg cccgaacacg aggcgctgtg agtgccatac
     6781 cggctacgtg ggtgatgggc tgcagtgtct ggaggagctt gaaccccctg tggaccgatg
     6841 cctggcagag tcctcaccgt gccacacaga tgctttgtgc acagacctac atttccagga
     6901 aaaacaggct ggtgtcttcc acatccaggc caccagtggc ccttatggct tgaccttctc
     6961 agaggccaag gaagcctgtg aggaccaggg agccgacctt gcttccctcc ctcaactctc
     7021 tgcggcccag cagctaggtt ttcatgtctg cttcctgggc tggttggcca atggctctgc
     7081 tgcccaccct gtggtcaccc cggcggcaga ctgtggtaat aatcgtgtag gtgtaatcag
     7141 cctcggcgtc cgcaagaacc tctcggagcg ctgggatgcc tactgttacc gtgtgcgaga
     7201 tgtggcttgc caatgtcggg tcggcttcgt gggtgacggg atcagcacgt gcaacgggaa
     7261 actgcttgat gtcctcgctg ctactgccga cttctccacc ttctatggga tgctgctggg
     7321 ctatgccaat gccacccagc gaggtcttga ctttatggac ttcctcgaag atgagctcat
     7381 ctacaagaca ctctttgttc ctgtcaatga aggctttctg gacaacatga cgctgagtgg
     7441 cccagaccta gaactccatg cttctaatgc cacctttctg agtgccaatg ccagccaggg
     7501 gacattgctt cctgcccact caggtcttag tctcttcata agtgacacag gtcctgacaa
     7561 catttctttg gttcctctgg ccccaggggc agttgtggtt agccacgtca tggtgtggga
     7621 catcatggct ttcaatggcg tcatccatgc tctggccagc cccctgctca cgcctcccca
     7681 gcctagggca gtgctgggat ctgagccgca gcctgtggca ttaagtttgg gggttgtgat
     7741 aacttgtgga acgctgctgg ggctggtagc tggagccctc tacctgcgtg cccgacgcaa
     7801 ggctccaggc ttcagcttct ctgtcttcca ggcagaagat aatgctgatg atgacttctc
     7861 tccatggcaa gaagggacca gcccgaccct ggtttctgtc cccaaccctg tttttggcag
     7921 cagcgacatc ttttgtgaac cctttgatga ttcagtcctg gaggaggact tccccgacac
     7981 ccaaagagtc ctcaaggtca aatgatgggc tggagcatgg acgacacaga ctacttttat
     8041 tgtttgtcag ggtggctgaa aggccgatag tttgtccagg acaataaaag cgccctcagc
     8101 ggatgtgggc catgtcacca a
//
