LOCUS       NM_001399379            3309 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus ST6 N-acetylgalactosaminide
            alpha-2,6-sialyltransferase 4 (St6galnac4), transcript variant 1,
            mRNA.
ACCESSION   NM_001399379
VERSION     NM_001399379.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3309)
  AUTHORS   Harduin-Lepers,A., Mollicone,R., Delannoy,P. and Oriol,R.
  TITLE     The animal sialyltransferases and sialyltransferase-related genes:
            a phylogenetic approach
  JOURNAL   Glycobiology 15 (8), 805-817 (2005)
   PUBMED   15843597
  REMARK    Erratum:[Glycobiology. 2005 Sep;15(9):21G]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360172.2128366.1,
                                           SRR26360190.1202431.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            CDS uses downstream in-frame AUG :: upstream AUG and CDS extension
                                                is not conserved
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-590               JAXUCZ010000003.1  36270243-36270832
            591-776             JAXUCZ010000003.1  36273139-36273324
            777-1189            JAXUCZ010000003.1  36277854-36278266
            1190-1297           JAXUCZ010000003.1  36279569-36279676
            1298-3309           JAXUCZ010000003.1  36280960-36282971
FEATURES             Location/Qualifiers
     source          1..3309
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3p11"
     gene            1..3309
                     /gene="St6galnac4"
                     /gene_synonym="siat7D"
                     /note="ST6 N-acetylgalactosaminide
                     alpha-2,6-sialyltransferase 4"
                     /db_xref="GeneID:407764"
                     /db_xref="RGD:1303005"
     exon            1..590
                     /gene="St6galnac4"
                     /gene_synonym="siat7D"
                     /inference="alignment:Splign:2.1.0"
     CDS             579..1487
                     /gene="St6galnac4"
                     /gene_synonym="siat7D"
                     /EC_number="2.4.3.7"
                     /note="alpha-2,6-sialyltransferase ST6GalNAc IV; ST6
                     (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,
                     3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4;
                     ST6 GalNAc alpha-2,6-sialyltransferase 4"
                     /codon_start=1
                     /product="alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,
                     3-N-acetyl-galactosaminide alpha-2,6-sialyltransferase"
                     /protein_id="NP_001386308.1"
                     /db_xref="GeneID:407764"
                     /db_xref="RGD:1303005"
                     /translation="MKARGRLLLLILCSLTLSALYVFLCCWACLPLCLATCLDPHLPA
                     PPRSTVPGPLHFRGYSSVPDGKPLTRELCHSCAVVSSSGQMLGSGLGAQIDGAECVLR
                     MNQAPTVGFEEDVGQRSTLRVISHTSVPLLLRNYSHYFQHARDTLYVVWGQGRHMDRM
                     LGGRTYRTLLQLTRMYPGLQVYTFTERMMAYCDQIFQDETGKNRRQSGSFLSTGWFTM
                     ILALELCEEIVVYGMVSDSYCSEKSPRSVPYHYFEKGRLDECQMYRLHEQAPRSAHRF
                     ITEKAVFSRWAKKRPIVFAHPSWKAK"
     exon            591..776
                     /gene="St6galnac4"
                     /gene_synonym="siat7D"
                     /inference="alignment:Splign:2.1.0"
     exon            777..1189
                     /gene="St6galnac4"
                     /gene_synonym="siat7D"
                     /inference="alignment:Splign:2.1.0"
     exon            1190..1297
                     /gene="St6galnac4"
                     /gene_synonym="siat7D"
                     /inference="alignment:Splign:2.1.0"
     exon            1298..3309
                     /gene="St6galnac4"
                     /gene_synonym="siat7D"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agcttccagg cttcagaagc tgcggccgca ggaccgcctc ctacccgggg ccggattccg
       61 gcccctctgg ccaggcccac tggacatgga gctccgacca gcgcatcctg agcccccggc
      121 gcactccaac ctgctcgtta ggttagcgct cagcttgggg aggggacggt ggaagctagc
      181 atggtgaaaa ccccacatcc tttccgcccc aggcctctcc atcgccccgc ggtagagagg
      241 tgggatggat ggggaagatg tttttctgac tcctggcttt ctttgcctgc ctctcaccga
      301 gtggatgacc ttgagccgag agcgcttctt ctttgcctct ccttccccat ctgaacaatg
      361 gggattggtt tggcaaggtc tctgaaccca cggcctttag gatgggacac gttgtcacat
      421 gcttggagac tttaaggctt ttggttactg ggcccatttt ccttgacctg gatttgtctc
      481 ttgcctcagt ttccctcata ttctgggacc agcttcgagc ctttctcatc ccaagctctg
      541 gagacagcag cctccagact gctgagtgca gagacagcat gaaggcccgg ggccgccttc
      601 tgctcctcat actatgctcc ctgacactct ccgctctcta tgtcttcctg tgttgctggg
      661 cctgcctgcc cctctgcctg gcaacctgcc tggaccccca cctccctgcg ccccccagat
      721 ccactgtgcc agggcccctg cacttcaggg gctacagcag cgtgccagat gggaagccgc
      781 ttacccgaga actgtgccac agctgtgcgg tggtgtccag ctctggccag atgctgggtt
      841 cgggcctggg tgctcagatc gatggtgcgg agtgcgtgct ccgcatgaac caggcaccca
      901 ctgtgggctt tgaggaggac gtgggccagc gcagcactct gcgcgtgatc tcgcacacga
      961 gtgtgccgtt actgctgcgt aactactcac actatttcca gcatgcccga gacacgctct
     1021 acgtggtgtg gggccagggc aggcacatgg accggatgct gggcggccgc acctaccgca
     1081 cattgcttca gctcaccaga atgtacccag gcctgcaagt gtacaccttc actgagcgca
     1141 tgatggccta ctgcgaccag atcttccaag atgagacggg caagaaccgg agacaatcag
     1201 gctccttcct tagcaccggt tggttcacca tgattctggc cctggagctg tgcgaggaga
     1261 tcgtggtcta cgggatggtc agtgatagct actgcagtga gaagagtcct cgctccgtgc
     1321 cctaccacta ctttgagaag ggcaggctgg atgagtgtca gatgtaccgt ttgcacgagc
     1381 aggctccgag gagcgcccat cgctttatca ccgagaaggc tgtgttctcc cgctgggcca
     1441 agaagcggcc catcgtgttc gcccacccgt cctggaaggc caagtagttc ctgttgccag
     1501 tgaccaccag gcctgtgacc cattccaggc cagctcgctc cagtataaac atttatgact
     1561 ttcaccttct acctgacacc aggtctctgt tacccaatgc tgggtgcact tggaggaatc
     1621 tcaggccttg tgacttgaag gggagtggag agggtgccat tcgtaccacc cctgcttcca
     1681 gaagaatcca cttcatcttg gggtttgtcc cacctccagg ttgtttaagt ggcctttgtc
     1741 ctggggccga tgaccccacc tcaccagcat tatggcttcg taacagtctt catctttctt
     1801 ctacctatct ccagccacat ggtgccatgt tctcaggctg gtggccctgg ttggtgcact
     1861 ctggaatttg ggatttgatg ggcatgaggg tgtttgcgcg tcagcctccc aggactgtct
     1921 cgggagtgtg ccagtgaatg catattttct ggacactatc tatgtggtaa caggcgtggg
     1981 atggcgatta ggacacaggc ctgtaacttg ttcgctggag ggcagactga accctccagc
     2041 tcttccctag gcccacggct gcctgctctt cctgcattgt ctagacatca gccccagcat
     2101 cccacaaact tggccttctt acggtctgac cacaggactg tgcaagccta ggaaagccac
     2161 cttgccccca cttggcaggc atagagcagt gcctgggcga actcagggtg agaaagaaat
     2221 tccacccaac gccactgacc tgccccatga gtcagattcc aaagtctttg ccagtcaagc
     2281 tgtctcttac tgggggactt ggttcctttg taaaacagaa ggcggaacgc agcttagggt
     2341 gggtgctaca tgggaaggag tgacctcagg gccagcccgt tctctgaatt ttgcttttca
     2401 gtgctaaaac acagccacca tcctgctctt aaggaaggtg tgatgctatc ctgaggaggg
     2461 agctggtgct tatttcatac agatggtgta tcccgggcta gctttctcga ggtggctgag
     2521 ctaggatgct gtcaggctcc agagagcact acctgtgctc tttggaagac tgaagaatgg
     2581 agccctgggc tctcagcttc agagttcagg accttctggg tgtaacctgt gcagtccccc
     2641 agagccccgt acttagccta atctttcctg ctacaaactt gaaattcctt attttaagct
     2701 ttggttttgt tttgttttgt ttttaatgag gaacctctca ggttcctttt gtaccagatc
     2761 ccacaaatga cagaaccgat catgctaagg actctggtga cctagcccac tctccctcct
     2821 acccatttcc ccaggagtga ctagagacct ggcatctggc ccacaacact gcccttgctc
     2881 ccatccagtg tcaggtggcc ctgaagcctc atgagtggga aggaaagcag agagggaaag
     2941 ctctgagcca gggatgcagg ctggaagcca agccatttcc tcagatctgg tggtgtcgag
     3001 gggctgtgag taggaacagg gcatcagtgc gtatcgggta agacgggggt tcctggcaac
     3061 aggcctgacc ccactttccc tggcaataaa gacggtagac tagctcctac ctcacaagat
     3121 tgcgtgagtt caaagatgct ggggtacccc tggggcttcg aacacacttg gctctcagtg
     3181 tccagaagcc gccatttaaa tggggtggcc tctgcctggg tggtcctgcc ccaccctggt
     3241 ataggtggta tcaatgcaaa ataatgacaa caacaaaata ataataaaaa gttctcatcc
     3301 cagcgggaa
//
