LOCUS       XM_039110707            1999 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ST3 beta-galactoside
            alpha-2,3-sialyltransferase 3 (St3gal3), transcript variant X6,
            mRNA.
ACCESSION   XM_039110707
VERSION     XM_039110707.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1999
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1999
                     /gene="St3gal3"
                     /gene_synonym="Siat6"
                     /note="ST3 beta-galactoside alpha-2,3-sialyltransferase 3;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 21 ESTs, 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 15 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:64445"
                     /db_xref="RGD:68414"
     CDS             252..1100
                     /gene="St3gal3"
                     /gene_synonym="Siat6"
                     /codon_start=1
                     /product="CMP-N-acetylneuraminate-beta-1,4-galactoside
                     alpha-2,3-sialyltransferase isoform X4"
                     /protein_id="XP_038966635.1"
                     /db_xref="GeneID:64445"
                     /db_xref="RGD:68414"
                     /translation="MMTAIFPRFSKPAPMFLDDSFRKWARIREFVPPFGIKGQDNLIK
                     AILSVTKEYRLTPALDSLHCRRCIIVGNGGVLANKSLGSRIDDYDIVIRLNSAPVKGF
                     EKDVGSKTTLRITYPEGAMQRPEQYERDSLFVLAGFKWQDFKWLKYIVYKERVSASDG
                     FWKSVATRVPKEPPEIRILNPYFIQEAAFTLIGLPFNNGLMGRGNIPTLGSVAVTMAL
                     HGCDEVAVAGFGYDMNTPNAPLHYYETVRMAAIKESWTHNIQREKEFLRKLVKARVIT
                     DLSSGI"
ORIGIN      
        1 accacaatgt agcacatccc ttctcttctc ccaggcaggt ggccaggaga gcagggcccc
       61 tggagagcct caggcaaagc aaggccttcc agggccgagg agggctcagg tcaagcggag
      121 gaggaggaag gccaggagag tatgataggc tgggtttcct cctgaagctg gactctaaac
      181 tgcctgcaga gctggccacc aagtacgcta acttttccga gggagcctgc aaacccggct
      241 acgcttcagc catgatgact gccatcttcc ccaggttctc caagccagca cccatgttcc
      301 tggatgactc ctttcgcaaa tgggctagga ttcgggagtt tgtgccaccc tttgggatca
      361 aaggtcaaga caatctgatc aaagccatct tgtcagtcac caaagaatac cgcctgaccc
      421 ctgccttgga cagcctccac tgccgccgct gcatcatcgt aggcaatgga ggggtcctcg
      481 ccaacaagtc tctggggtca cgaattgacg actatgacat tgtgatcaga ttgaactcag
      541 cacctgtgaa gggctttgag aaggacgtgg gcagcaagac caccctgcgc atcacctacc
      601 ctgaaggtgc catgcagcgg cctgagcaat atgaacgaga ctctctcttt gtcctcgctg
      661 gcttcaagtg gcaggacttc aagtggctga agtacatcgt ctacaaggag agagtgagcg
      721 catccgatgg cttctggaag tccgtggcca cccgagtgcc caaggagccc cctgagatcc
      781 gcatcctcaa cccgtacttc atccaggagg ctgccttcac gctcatcgga ctgcccttca
      841 acaatggcct catgggcaga gggaacatcc caacccttgg cagtgtggca gtgaccatgg
      901 cactgcatgg ctgtgatgaa gtggcagtcg cgggctttgg ctatgacatg aacacaccca
      961 acgcccccct gcactactat gaaactgtgc gcatggcagc catcaaagag tcctggacac
     1021 acaacatcca gcgagagaaa gagtttctgc ggaagctagt gaaagcacgc gtcatcactg
     1081 acttaagcag tggtatctga gtgggccgga cactgggcca gagaggctca cgccaggacc
     1141 aagctactgc cacctgcaca ggagccttcc aacccagaga aggacagtgc caaggggccc
     1201 gagggccagt gaggccttgg caaggcaacc agagctgtgc ccactacagg gcagcttcag
     1261 agaccagcac cctgccttgc agtctgggtc cgtgaagcca gagggccagg aggccactgg
     1321 ctgtggccag caggcccagc atgcaggagg tgggacattt ggtagcaaga gcgctgccaa
     1381 aatcatttct ctaatcagtg tttggtgtat tatcatttcg tgaatttggg tatggggagg
     1441 ggagggataa tttatttttt aattagttgt cacatttggt ccacttgtgc agaaagaggc
     1501 ccactagagg gcccagcagc agtggtacca gtgagctccc tcaaggatga agtgtggtga
     1561 ccatgcttca gggacaggga agtggatggc atcttatgtc agccagccgt ctccagctca
     1621 tgacactctt tggccttcct ttggggagaa gatggagtac tccccctcac cagccaccag
     1681 tgtcccacag gggaacccca gagccatccc tttaaagcca acaggacagc tcttggtcaa
     1741 gagcagagaa ctcaggaggc aagcctcaga ccagcctgac aggaatgaat ggctcggttc
     1801 atagctgtcc ctactccatg gggcaatgct ccttcctgga ctgaccaact gtcagatggt
     1861 ctgggtttct agacgagact gccagctcca tgggtcctac ccaggaccag caggaagtga
     1921 ggctcaagga ccttacccag gctgcggcag ctggcccggg cagccctcac agaagcaata
     1981 aagctgtcct ctgaattca
//
