LOCUS       XM_039102140            3356 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus SSX family member 2 interacting
            protein (Ssx2ip), transcript variant X3, mRNA.
ACCESSION   XM_039102140
VERSION     XM_039102140.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039102140.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3356
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3356
                     /gene="Ssx2ip"
                     /gene_synonym="ADIP"
                     /note="SSX family member 2 interacting protein; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 30 ESTs, 7 long SRA reads, 7 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:308023"
                     /db_xref="RGD:708490"
     CDS             222..2063
                     /gene="Ssx2ip"
                     /gene_synonym="ADIP"
                     /codon_start=1
                     /product="afadin- and alpha-actinin-binding protein
                     isoform X1"
                     /protein_id="XP_038958068.1"
                     /db_xref="GeneID:308023"
                     /db_xref="RGD:708490"
                     /translation="MGDWMTVTDPVLCTENKNLSQYTSETKMSPSSLYSQQVLCSATP
                     LSKNVHGVFSAFCTGENIEQSISYLDQELTTFGFPSLYEESKSKEAKRELSIVALLNC
                     MNELLVLQRKNLLAQESVETQNLKLGSDMDHLQSCYAKLKEQLEASRREMISLQERDR
                     QLQCKNRNLHQLLKNEKEEVQKLQNIIASRATQYNHDVKRKEREYNKLKERLHQLVMN
                     KKDKNIAMDVLNYVGRVDGKRGSWRTDKTEARNEDEMYKILLNDYEYRQKQILLENAE
                     LKKVLQQMKKEMISLLSPQKKKPRERAEDSTGTVVISDVEDDAGELSRDGVWSLSCDT
                     VREQLTNSIRKQWRILKSHVEKLDNQASKVHSEGFHEEDVISRQDHEQETEKLELEIE
                     RCKEMIKAQQQLLQQQLATACDDDTTSLLRDCYLLEEKERLKEEWSLFKEQKKNFERE
                     RRSFTEAAIRLGLERKAFEEERASWVKQQFLNMTTFDHQNSENVKLFSAFSGSSDPDN
                     LIVHPRPRQKKPHSVANGVPACTSKLAKSLPTSPSDFCPSRSCVSEHSPVSALTVTPE
                     ETKPNEVGRESTDQKWSVVSRPSSREGCYGGCSSAYTSSHVERDDLP"
ORIGIN      
        1 gtccgccgta ggtgggtgct tcatcgtggt ccagccccac gtttagggga agaacttaca
       61 tcatcgcagg ggtagacttg ctggagaaat tatttggcct cgatttttcc agtggtgcac
      121 agtgagtgaa tggagatgct cacgtaggag agtgacagga gctgttgtgc atgccccagc
      181 actgaactgc cttctcaggg accctggctc tgggactggc tatgggagat tggatgactg
      241 ttacagatcc agttctgtgt acagaaaaca aaaatctctc tcaatatacc tcagaaacaa
      301 agatgtctcc gtcaagttta tactcgcagc aagtactgtg ctctgcaaca cctttatcca
      361 agaatgtgca tggtgttttc agtgccttct gcacaggaga gaacatcgaa cagagtattt
      421 cgtatcttga tcaggaactg actaccttcg gtttcccttc cttgtatgaa gaatccaaaa
      481 gtaaggaggc gaagcgagag ttaagtatag ttgctcttct gaactgcatg aatgagctgc
      541 ttgtgcttca gcggaagaac ctcctggccc aagaaagcgt ggagacacag aatctgaagc
      601 tgggcagtga catggaccac ctgcagagct gctacgccaa acttaaggaa cagttggagg
      661 cctccaggcg agagatgatc agccttcagg agagagacag acagctacag tgcaaaaaca
      721 ggaatttgca tcagctcctg aaaaacgaga aagaagaggt acaaaaatta caaaatatca
      781 tagccagtcg ggctactcag tataatcatg atgtgaagag aaaggagcgg gagtacaata
      841 aactgaagga gcgtctgcat cagcttgtta tgaacaagaa ggataaaaat atagccatgg
      901 acgttttaaa ttacgtgggc cgagtggatg gaaagcgagg ctcctggagg actgataaaa
      961 cagaagccag gaatgaagat gaaatgtaca aaattctgct gaatgattat gagtaccgcc
     1021 agaagcagat cctgctggag aatgcggagc tgaagaaggt cctccagcag atgaagaaag
     1081 agatgatctc tctcctttct cctcaaaaga agaaacccag agaaagagca gaggacagca
     1141 caggcactgt tgtcatctcc gatgtagaag acgacgctgg ggagctgagc agagatggtg
     1201 tgtggagcct ttcctgtgac actgtcaggg agcagcttac aaacagcatc aggaagcagt
     1261 ggagaattct gaaaagccat gtggaaaaac ttgataacca agcttcaaag gtacactcag
     1321 agggctttca tgaagaggac gtcatctcac gacaagacca tgagcaagag actgagaaac
     1381 tggagctgga gattgagcgg tgtaaagaga tgatcaaggc tcagcagcag ctcttacagc
     1441 aacagctggc cactgcgtgt gatgacgaca ccacctcact gttgcgagac tgttacttgc
     1501 ttgaagaaaa ggaacgcctt aaagaagagt ggtccctttt taaagagcaa aaaaagaatt
     1561 ttgagagaga aagacgaagc tttacagaag ctgctattcg cttggggttg gagagaaagg
     1621 cgtttgagga agagcgagcc agctgggtga agcagcagtt tttaaacatg acgacctttg
     1681 atcaccagaa ctcagaaaat gtgaaacttt tcagtgcctt ttcaggaagt tctgatccag
     1741 acaatcttat agtccaccca cggccacggc aaaagaagcc acacagtgtc gctaatgggg
     1801 taccagcttg cacatccaaa ctggctaagt ctcttccgac ctcaccttca gacttctgcc
     1861 cgtctcgctc atgtgtgtct gagcacagtc ccgtcagtgc gctgactgtg actcctgaag
     1921 aaaccaaacc gaatgaggtt ggaagagaaa gtacggacca gaagtggagc gtggtgtcca
     1981 gacccagctc ccgggagggt tgctacggtg gatgctcctc ggcctacaca agctcccacg
     2041 tggaacgaga tgacttacca taggtgctcg ggctgcagcg ctgtcctgga gtgcatgaga
     2101 ggaattgaca cggggtgtag cataaagtca gccatctacc ttaagatgtc ggagttgttt
     2161 gtttggactt cccagtcttt ccccaaagag ctgaaacgct ttagaggatg cgaaagcttt
     2221 ggctgtgtgt tagtaacaga agcctctggc tctgtgagta aaggaatgta tggtgtttgg
     2281 tgggaaacaa aagcacgaga atgatttcct cttccgggta ctgagaatag cacttttagg
     2341 gactgattct tgtaaacatt aaatttttgt cccaagtatg gttggcattg gaagtttagt
     2401 ctttacttga atgtacactg tagattttta acaaagcagt tctatattta ttatgtttag
     2461 tgtgattttg ggattacctc tttcatatgt tttctgcctg tacataaata tacatgacta
     2521 tgttaagagg ctttaaggtt taaaaatttc acaccatgct cgagtatagc atttcatgcc
     2581 aattaaaatg ttttcagtgg catggtgttt acagatgtgt taggaccact gccacatgac
     2641 agttaagatt ttatttttaa gccatttggg caataaaaat tcaaagccac ttcataagct
     2701 aagttcagat agctaaaact actaacatta catttttgag atttataaag cattatattt
     2761 tattttatat atgtgactgt tataatttct aagaggaatg tggattatga agcaatgggg
     2821 gaaagacaga agtgactaat agtgcaagag cattgggtga agggacggct gatgaggata
     2881 tgggagacct gggtggtgat cttttcctta ccgacggtgc ggtgcggcga tctctgtacc
     2941 gccagggctt tctatcattg ccaatacttt tgtaattaaa gagattttca actacatacc
     3001 actactaaag taagacagtg taaaactttg gcttttgtaa ttgacactct ggacactggt
     3061 gtgttgttca tttctagaac aatcgtaggc tcttttctct gtttctgctg catgtttctt
     3121 catgagaagt atgttactat tgacagtaat gacactgaca gtgactgtag acgtaggccc
     3181 agacttctcc tgggtggatt ttcatccagc agcttttaag tgcctcgccc tgctcgtctc
     3241 tgcacatagc cgccgacaca agccctcgct tgatgatgca gatagtccat ctgcctttct
     3301 ctccccttgc cctgctatga ctgttgcatt aaattcatca tgctgccaaa agacaa
//
