LOCUS       XM_017602233            1102 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus SSX family member 2 (Ssx2), mRNA.
ACCESSION   XM_017602233
VERSION     XM_017602233.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017602233.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017602233.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1102
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1102
                     /gene="Ssx2"
                     /note="SSX family member 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:103690782"
                     /db_xref="RGD:9097277"
     CDS             110..577
                     /gene="Ssx2"
                     /codon_start=1
                     /product="protein SSXA1-like"
                     /protein_id="XP_017457722.1"
                     /db_xref="GeneID:103690782"
                     /db_xref="RGD:9097277"
                     /translation="MTHSVNLRKTKHKPEEACKAFEDISKYFSREEWAKLSHSEKITY
                     VYMKRNYTTMTNLGLRAHLPDFMESNEQATKSVLNDSDEVFSHESQGLRRRPVSIWSH
                     RLRERKKQVIYEEISDPEDEKEEREEEKIEKGIGGQGGEGERGKEGRRKNTMV"
ORIGIN      
        1 tgcttggcaa ctgaggtagg ctctttcttt cggaggaatg ctttagacaa cttataccag
       61 gaaggctgaa agtgttcaag cataccttga agattgtatc cccagtgcca tgactcattc
      121 agtgaacctc aggaaaacta agcataagcc agaggaggca tgtaaggcat tcgaggatat
      181 ctccaaatac ttctctaggg aagagtgggc aaagctcagc cattcagaga agatcacata
      241 tgtgtacatg aaaagaaact acaccaccat gactaatcta ggcctcagag cccatctgcc
      301 agatttcatg gaatctaatg aacaggccac aaaatctgtg ctcaatgatt ctgatgaagt
      361 tttcagccat gagagtcaag gactcaggag aaggccagtg agcatctgga gtcatcggtt
      421 aagggaaaga aagaagcaag tgatatatga agagatcagt gacccagaag atgaaaaaga
      481 agaaagagag gaagaaaaaa tagagaaagg aatcggagga caaggaggag aaggagaaag
      541 aggaaaagaa ggaaggagga agaacaccat ggtgtgaaga agaacatcat tgacctcaag
      601 attatgggca caaccttaaa atcctaaaca tcaaaaagaa aaattctcag cagggaaagt
      661 taagaaacat tgtaccttct aagtgccaag gaatgtcttg aacattggtt atactgtgtg
      721 tcaaattagc attgatcctt ttgtgtattc ttctcttagc attgattgta ctgagttttt
      781 actctataag tactgctctt agtgtgtcca tatacatctc ttaacattgt tcttattgtt
      841 tcaagtactg cattaacatg gttcttgcat ttcacaagtt cattaacatt cttcttcaca
      901 agaactatat acccatctta ttacatacct tctaccagca ttatatttat tgtgaaccat
      961 aagtagggct cctattttgt ctggaccact ctcatagcag tactcttatg atatatcctg
     1021 aattactcaa ccattgtttt tattgtgata accaccctgt atgatgttac aatcctgtta
     1081 agaaataaaa attagcaatg ca
//
