LOCUS       XM_039100571             807 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus SSX family member 1 (Ssx1), transcript
            variant X1, mRNA.
ACCESSION   XM_039100571
VERSION     XM_039100571.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039100571.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..807
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..807
                     /gene="Ssx1"
                     /note="SSX family member 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 10
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:691903"
                     /db_xref="RGD:1593374"
     CDS             128..670
                     /gene="Ssx1"
                     /codon_start=1
                     /product="putative protein SSX9 isoform X1"
                     /protein_id="XP_038956499.1"
                     /db_xref="GeneID:691903"
                     /db_xref="RGD:1593374"
                     /translation="MVSFQNHSDPIGTKTVSSCAKIPMEVFCEPKNICKAFQDISAYF
                     SDEEWGKLTKWQKSAYVYMKRNYIRMTGLGVTVNQPVFMRCKEQAKQSVVECIEVHDS
                     EDECSDETYGVPPRKRMKLASVTISIHNVKGRLASGKNGSNLAGAGGIQVNAWSHRLR
                     ERKTRVIYEEISDPEEDDED"
ORIGIN      
        1 ttccattctt acctcacttg ccccacctac ttcgctgagg agttcatagc gattgactgc
       61 tctggttgct gaatctctag agacagctga atcaaggaca ttttgttttt agtcagaaga
      121 agacaagatg gtgtcttttc aaaaccacag tgaccccatt ggcacgaaaa cagtgagttc
      181 ctgtgcaaag atccccatgg aagtgttttg tgaaccaaag aatatatgca aggccttcca
      241 ggatatttct gcctactttt ctgatgaaga gtggggaaag ctgaccaaat ggcagaaaag
      301 tgcctacgtg tatatgaaaa ggaactacat cagaatgact ggcctagggg tcacagtgaa
      361 ccaaccagtt ttcatgcgtt gcaaggagca ggccaagcag tctgtggtcg aatgtattga
      421 agttcatgac agtgaagatg aatgttctga tgaaacctat ggtgtgccac cgaggaaacg
      481 gatgaagctg gcatcagtga ccataagtat tcataatgtg aaaggaagac ttgcctctgg
      541 aaagaatggt tctaatttgg caggagctgg tggtattcag gtaaatgctt ggagccaccg
      601 actgcgagag aggaagactc gagtgatata tgaagagatt agtgatcccg aagaagatga
      661 tgaagattga attaagagtc gaaataagcc cacggtggaa gaagatgtgg tgggaactga
      721 ggatcacagc tacaactttg aaagactaaa tatcagcgct atatatacat acatatttat
      781 ttatttattt ataaaacttt agtgcag
//
