LOCUS       XM_002729443            1517 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ssu-2 homolog (Ssuh2), transcript
            variant X1, mRNA.
ACCESSION   XM_002729443
VERSION     XM_002729443.6
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 4, 2024 this sequence was replaced by
            NM_001426921.1.
            
            On Jan 21, 2021 this sequence version replaced XM_002729443.5.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1517
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1517
                     /gene="Ssuh2"
                     /note="ssu-2 homolog; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 EST, 3 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:500286"
                     /db_xref="RGD:1562010"
     CDS             147..1274
                     /gene="Ssuh2"
                     /codon_start=1
                     /product="protein SSUH2 homolog isoform X1"
                     /protein_id="XP_002729489.2"
                     /db_xref="GeneID:500286"
                     /db_xref="RGD:1562010"
                     /translation="MDRDTSEDSMADLSFEAESPVMPPDELLEGLPSFDWLLQGRGRQ
                     VFFPPLEALGRSQEPTCWSSVLGHSRVPVVTEEVAREALLSFVNSQCCYSSAAAGDFI
                     IQELRQQTLCRYRLETFSESRVSEWTFQPVTNHSVDGPQRGTSPRLWDMKVQVPPMFQ
                     EDTRKFQVPHSSLVKECHKCHGRGRYKCSGCHGAGMVRCSSCSGTKRKARQPRRCHMC
                     SGSGRRRCSTCSGRGNKTCATCKGERKLEHFVQLVIVWKNSLFEFVSPHHLHCPGELL
                     TKARGENLFKDENAMVYPIVDFPLKDISLASKRGIEEHSAMLSSRARILQQRQTIELI
                     PITEVHYWYQGKTSVYYIYGTDHQVYVADYPERYCCGCTIL"
ORIGIN      
        1 ggctgtgctc tgacggacat atggtggctt tgcctctgtt acgtccacat cagtaacaat
       61 gggctgggag gggcagaggg gagttcctca gattggaacc tcggtcctca ggagcataca
      121 ttcatacttg gcagggcgtc tcgaccatgg acagggacac gagtgaggac agcatggctg
      181 acctcagctt tgaggctgag agtcctgtga tgccccctga tgagctcctg gagggattgc
      241 ccagctttga ctggcttctt caagggcgcg gaaggcaggt cttcttcccg cccttggagg
      301 ccctggggag gtcacaggag cctacatgtt ggtcttcagt cctggggcac agcagagtcc
      361 ctgtggtgac agaggaggtg gcccgtgaag ccttgctcag ttttgtgaac tcccagtgct
      421 gctacagcag tgccgctgct ggcgacttca tcatccagga gctgaggcag caaactctct
      481 gcaggtatcg gctggagacc ttcagtgaat ccagagtcag cgagtggaca tttcagcctg
      541 taaccaacca ctcagtggat gggccacaga gaggcacctc ccccaggctt tgggatatga
      601 aggtccaggt gcctccgatg tttcaggaag acaccaggaa gttccaagtg ccccactcct
      661 ccctggttaa ggaatgtcac aaatgccacg ggcgtggccg ctacaagtgc agcggctgcc
      721 atggggctgg catggtgagg tgttcgtcct gcagtggcac caagcgcaaa gccaggcagc
      781 cccggagatg ccacatgtgc tctggctctg gccgacgcag gtgcagtacg tgctctggga
      841 ggggcaacaa gacatgtgcc acctgcaagg gggagagaaa gctggagcac tttgtccagc
      901 tggtcatcgt gtggaagaac agcctgtttg agtttgtgtc cccacaccac ctccactgcc
      961 ctggggagct gctcaccaaa gccagagggg aaaacctctt caaggatgag aatgccatgg
     1021 tgtaccccat tgtggatttt cccctgaagg acatctctct ggcctccaag aggggcattg
     1081 aggaacacag cgccatgctg tcctcccgtg ctcgcatcct tcagcagcgc cagaccatcg
     1141 agctgatccc catcacagaa gttcattact ggtatcaagg aaagacttct gtctactaca
     1201 tctatggcac cgaccaccaa gtgtacgtgg ctgactaccc tgagcgatac tgctgtggat
     1261 gcaccatcct ctgataggca cagctgtccc cagactccaa tggtcacatt tgacaagggg
     1321 acagcagtac tctttgagtt tagttgtgtt ggtgatgttg gacaaccccc catgcaaatc
     1381 ttggaagtct ttctgaacaa gctaatgatc tatcaagagt caattattga tggagctcgt
     1441 ttggtgagac ctatgtttaa ctcacaagaa ttctcctaac caagttcctc tagagtaaag
     1501 gtgagatgca agataaa
//
