LOCUS       NM_001025657            1063 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus SSU72 homolog, RNA polymerase II CTD phosphatase
            (Ssu72), mRNA.
ACCESSION   NM_001025657 XM_216596
VERSION     NM_001025657.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1063)
  AUTHORS   Jeronimo,C., Bataille,A.R. and Robert,F.
  TITLE     The writers, readers, and functions of the RNA polymerase II
            C-terminal domain code
  JOURNAL   Chem Rev 113 (11), 8491-8522 (2013)
   PUBMED   23837720
  REMARK    Review article
REFERENCE   2  (bases 1 to 1063)
  AUTHORS   Egloff,S., Dienstbier,M. and Murphy,S.
  TITLE     Updating the RNA polymerase CTD code: adding gene-specific layers
  JOURNAL   Trends Genet 28 (7), 333-341 (2012)
   PUBMED   22622228
  REMARK    Review article
REFERENCE   3  (bases 1 to 1063)
  AUTHORS   Xiang,K., Nagaike,T., Xiang,S., Kilic,T., Beh,M.M., Manley,J.L. and
            Tong,L.
  TITLE     Crystal structure of the human symplekin-Ssu72-CTD phosphopeptide
            complex
  JOURNAL   Nature 467 (7316), 729-733 (2010)
   PUBMED   20861839
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC099142.1.
            
            On Jul 22, 2005 this sequence version replaced XM_216596.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC099142.1, BG663059.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1063
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q36"
     gene            1..1063
                     /gene="Ssu72"
                     /gene_synonym="RGD1307854"
                     /note="SSU72 homolog, RNA polymerase II CTD phosphatase"
                     /db_xref="GeneID:298681"
                     /db_xref="RGD:1307854"
     exon            1..343
                     /gene="Ssu72"
                     /gene_synonym="RGD1307854"
                     /inference="alignment:Splign:2.1.0"
     CDS             264..848
                     /gene="Ssu72"
                     /gene_synonym="RGD1307854"
                     /EC_number="3.1.3.16"
                     /note="CTD phosphatase SSU72"
                     /codon_start=1
                     /product="RNA polymerase II subunit A C-terminal domain
                     phosphatase SSU72"
                     /protein_id="NP_001020828.1"
                     /db_xref="GeneID:298681"
                     /db_xref="RGD:1307854"
                     /translation="MPSSPLRVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKL
                     PGPAPDKPNVYDFKTTYDQMYNDLLRKDKELYTQNGILHMLDRNKRIKPRPERFQNCK
                     DLFDLILTCEERVYDQVVEDLNSREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQ
                     CIQHTEDMENEIDELLQEFEEKSGRAFLHTVCFY"
     exon            344..487
                     /gene="Ssu72"
                     /gene_synonym="RGD1307854"
                     /inference="alignment:Splign:2.1.0"
     exon            488..627
                     /gene="Ssu72"
                     /gene_synonym="RGD1307854"
                     /inference="alignment:Splign:2.1.0"
     exon            628..746
                     /gene="Ssu72"
                     /gene_synonym="RGD1307854"
                     /inference="alignment:Splign:2.1.0"
     exon            747..1039
                     /gene="Ssu72"
                     /gene_synonym="RGD1307854"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 caggagctgt gacgtcaggt gccggcaaag gtggtccacg accgcaggcc ttagctgctc
       61 tcaaacagat tcagcgttgg ccggtcgctc tcccgcgccg cttgcagtgc gggcccagga
      121 aagcaccgtc ggcctcccca cgcgttacgt cgccctcatt tccgcatcgc tgatttccgg
      181 ttaccgccat cttcctcgcg cggaagccgg cttctaggtg ggagagctcc gtagtgagtg
      241 cagtgggtag ttcggtcggt gccatgccgt catcgccgct gcgggtggcg gtggtgtgct
      301 cgagtaacca gaatcggagc atggaagcac acaacatcct cagcaaacgt ggtttcagtg
      361 tccgctcctt tggaacagga actcatgtga agctcccagg accagcacct gacaagccca
      421 atgtttatga cttcaaaacc acatatgacc agatgtacaa tgatctcctc aggaaagaca
      481 aagaactcta tacacaaaat ggaattctac atatgttgga cagaaataaa aggatcaagc
      541 cccgtccaga aagattccag aactgcaaag acctgtttga cctgatcctc acttgtgaag
      601 agagagtcta tgaccaggtt gtagaagatc tgaactccag ggaacaggag acctgccagc
      661 cagtgcatgt ggtcaatgtg gacatccagg acaaccatga agaggccacc ctgggagcat
      721 tccttatctg cgagctctgc cagtgtatcc agcacaccga ggatatggag aatgaaatcg
      781 atgagctgct gcaggagttt gaggagaaga gtggccgggc ctttctgcat actgtctgct
      841 tctactgagc catcccgctt ggtgcatggc ctggcaccac caagccacct ttgctgaagt
      901 cactttttcc atgtgttttc cctgctacgt gtacatcacc aatgtactgt acatatagag
      961 tgagacatac acagaaatgc cagattcaaa accattgttt ttaaccaaaa gaaataaaga
     1021 tggtttactc tacaccctaa aaaaaaaaaa aaaaaaaaaa aaa
//
