LOCUS       NM_031121               2856 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Rattus norvegicus structure specific recognition protein 1 (Ssrp1),
            mRNA.
ACCESSION   NM_031121 XM_342457
VERSION     NM_031121.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2856)
  AUTHORS   Charles Richard,J.L., Shukla,M.S., Menoni,H., Ouararhni,K.,
            Lone,I.N., Roulland,Y., Papin,C., Ben Simon,E., Kundu,T.,
            Hamiche,A., Angelov,D. and Dimitrov,S.
  TITLE     FACT Assists Base Excision Repair by Boosting the Remodeling
            Activity of RSC
  JOURNAL   PLoS Genet 12 (7), e1006221 (2016)
   PUBMED   27467129
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2856)
  AUTHORS   Burgess,R.J. and Zhang,Z.
  TITLE     Histone chaperones in nucleosome assembly and human disease
  JOURNAL   Nat Struct Mol Biol 20 (1), 14-22 (2013)
   PUBMED   23288364
  REMARK    Review article
REFERENCE   3  (bases 1 to 2856)
  AUTHORS   Kwak,H. and Lis,J.T.
  TITLE     Control of transcriptional elongation
  JOURNAL   Annu Rev Genet 47, 483-508 (2013)
   PUBMED   24050178
  REMARK    Review article
REFERENCE   4  (bases 1 to 2856)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   5  (bases 1 to 2856)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   6  (bases 1 to 2856)
  AUTHORS   Vethantham,V., Yang,Y., Bowman,C., Asp,P., Lee,J.H., Skalnik,D.G.
            and Dynlacht,B.D.
  TITLE     Dynamic loss of H2B ubiquitylation without corresponding changes in
            H3K4 trimethylation during myogenic differentiation
  JOURNAL   Mol Cell Biol 32 (6), 1044-1055 (2012)
   PUBMED   22252316
REFERENCE   7  (bases 1 to 2856)
  AUTHORS   Winkler,D.D. and Luger,K.
  TITLE     The histone chaperone FACT: structural insights and mechanisms for
            nucleosome reorganization
  JOURNAL   J Biol Chem 286 (21), 18369-18374 (2011)
   PUBMED   21454601
  REMARK    Review article
REFERENCE   8  (bases 1 to 2856)
  AUTHORS   Todd,R.C. and Lippard,S.J.
  TITLE     Inhibition of transcription by platinum antitumor compounds
  JOURNAL   Metallomics 1 (4), 280-291 (2009)
   PUBMED   20046924
  REMARK    Review article
REFERENCE   9  (bases 1 to 2856)
  AUTHORS   Spencer,J.A., Baron,M.H. and Olson,E.N.
  TITLE     Cooperative transcriptional activation by serum response factor and
            the high mobility group protein SSRP1
  JOURNAL   J Biol Chem 274 (22), 15686-15693 (1999)
   PUBMED   10336466
REFERENCE   10 (bases 1 to 2856)
  AUTHORS   Wang,L., Precht,P., Balakir,R. and Horton,W.E. Jr.
  TITLE     Rat and chick cDNA clones encoding HMG-like proteins
  JOURNAL   Nucleic Acids Res 21 (6), 1493 (1993)
   PUBMED   8464746
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC083588.1.
            
            On Oct 11, 2004 this sequence version replaced XM_342457.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC083588.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2856
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q24"
     gene            1..2856
                     /gene="Ssrp1"
                     /note="structure specific recognition protein 1"
                     /db_xref="GeneID:81785"
                     /db_xref="RGD:621143"
     exon            1..347
                     /gene="Ssrp1"
                     /inference="alignment:Splign:2.1.0"
     CDS             294..2423
                     /gene="Ssrp1"
                     /note="T160; recombination signal sequence recognition
                     protein 1; facilitates chromatin transcription complex
                     subunit SSRP1"
                     /codon_start=1
                     /product="FACT complex subunit SSRP1"
                     /protein_id="NP_112383.1"
                     /db_xref="GeneID:81785"
                     /db_xref="RGD:621143"
                     /translation="MAETLEFNDIFQEVKGSMNDGRLRLSRQGIIFKNSKTGKVDNIQ
                     AGELTEGIWRRVALGHGLKLLTKNGHVYKYDGFRESEFEKLSDFFKTHYRLELMEKDL
                     CVKGWNWGTVKFGGQLLSFDIGDQPVFEIPLSNVSQCTTGKNEVTLEFHQNDDAEVSL
                     MEVRFYVPPTQEDGVDPVEAFAQNVLSKADVIQATGDAICIFRELQCLTPRGRYDIRI
                     YPTFLHLHGKTFDYKIPYTTVLRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILL
                     FSKDEDISLTLNMNEEEVEKRFEGRLTKNMSGSLYEMVSRVMKALVNRKITVPGNFQG
                     HSGAQCITCSYKASSGLLYPLERGFIYVHKPPVHIRFDEISFVNFARGTTTTRSFDFE
                     IETKQGTQYTFSSIEREEYGKLFDFVNAKKLNIKNRGLKEGINPGYDDYADSDEDQHD
                     AYLERMKEEGKIREENANDSSDDSGEETDESFNPGEEEEDVAEEFDSNASASSSSNEG
                     DSDREEKKRKQLKRAKMAKDRKSRKKSSEGKKGKDPNAPKRPMSAYMLWLNASREKIK
                     SDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAMKEYEGGRGDSSKR
                     DKSKKKKKVKAKLEKKSTPSRGSSSKSSSRQLSDSFKSKEFVSSDESSSGENKSKKKR
                     RRSEDSDEEELASTPPSSEDSASGSDE"
     exon            348..533
                     /gene="Ssrp1"
                     /inference="alignment:Splign:2.1.0"
     exon            534..639
                     /gene="Ssrp1"
                     /inference="alignment:Splign:2.1.0"
     exon            640..830
                     /gene="Ssrp1"
                     /inference="alignment:Splign:2.1.0"
     exon            831..1061
                     /gene="Ssrp1"
                     /inference="alignment:Splign:2.1.0"
     exon            1062..1165
                     /gene="Ssrp1"
                     /inference="alignment:Splign:2.1.0"
     exon            1166..1294
                     /gene="Ssrp1"
                     /inference="alignment:Splign:2.1.0"
     exon            1295..1516
                     /gene="Ssrp1"
                     /inference="alignment:Splign:2.1.0"
     exon            1517..1589
                     /gene="Ssrp1"
                     /inference="alignment:Splign:2.1.0"
     exon            1590..1728
                     /gene="Ssrp1"
                     /inference="alignment:Splign:2.1.0"
     exon            1729..1774
                     /gene="Ssrp1"
                     /inference="alignment:Splign:2.1.0"
     exon            1775..1904
                     /gene="Ssrp1"
                     /inference="alignment:Splign:2.1.0"
     exon            1905..2075
                     /gene="Ssrp1"
                     /inference="alignment:Splign:2.1.0"
     exon            2076..2164
                     /gene="Ssrp1"
                     /inference="alignment:Splign:2.1.0"
     exon            2165..2351
                     /gene="Ssrp1"
                     /inference="alignment:Splign:2.1.0"
     exon            2352..2834
                     /gene="Ssrp1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggcctggctc tgcacctagg gtcctgggcc ttggcctcag gagcgctgca gagccggtca
       61 gtaagattcc caggcagtag agaacttgag atattccagg cacagctact catgggtgat
      121 cggagtaagg tgtcgtttct tgcttatcag tctccttccc gaattcagat tcacaccctg
      181 ctgaacatct ctacacacct aaccaggaat tgggacccag catccagata agggttcgtt
      241 tttctctggt gcagcttagg gctgtgtgct cagaacacca cgggcaggtg aacatggcag
      301 agacattgga gttcaacgac atcttccagg aggtgaaagg gtccatgaat gatgggaggc
      361 ttcgattgag ccgtcagggt atcatcttta agaacagcaa gacgggcaaa gtggacaaca
      421 tccaggccgg ggagttgacc gaaggcatct ggcgtcgggt agcattaggc catggactta
      481 aactgctcac aaagaatggg catgtctaca agtatgatgg cttccgtgaa tcggaatttg
      541 agaagctctc tgactttttc aaaacccact atcgccttga gctgatggag aaggatctct
      601 gtgtgaaggg ctggaactgg gggacagtga aatttggtgg gcagctgctt tcttttgaca
      661 ttggtgatca accagtcttt gagatacccc taagcaatgt gtcccagtgt acaacaggca
      721 agaatgaggt gaccctggaa ttccaccaga acgatgatgc tgaagtatct ctcatggagg
      781 tgcgcttcta tgtccctccc acgcaggaag atggagtgga ccctgtggag gcctttgccc
      841 agaatgtcct gtcaaaggca gatgtgatcc aggccactgg agatgccatc tgcatcttcc
      901 gggagctgca gtgtttgact cctcgtggtc gttacgatat ccggatctac cctacctttc
      961 tacacctgca tggcaaaacc tttgactaca agatccccta tactacagtt ctccgtctct
     1021 tcctactgcc ccacaaggat cagagacaga tgttctttgt gatcagcctg gatcccccca
     1081 tcaagcaggg ccaaactcgt taccacttcc tgatcctcct cttctcaaag gatgaggaca
     1141 tctccttgac tctcaacatg aatgaggaag aagtagaaaa gcgctttgag gggcgactca
     1201 ccaagaacat gtcaggatcc ctttatgaga tggttagccg ggtcatgaaa gcacttgtaa
     1261 accgtaaaat cacagtccca ggcaacttcc aagggcattc gggggcccag tgtatcacct
     1321 gctcctataa ggccagctca ggactcctgt acccactgga gcggggcttc atctatgtgc
     1381 acaagccccc tgtgcacatc cgcttcgatg agatctcttt cgtcaacttt gcccgtggca
     1441 ccacaaccac tcgttccttc gactttgaga ttgagaccaa gcaaggcact cagtatacct
     1501 tcagcagcat tgagcgggaa gagtatggaa agctgtttga ttttgtcaat gcaaaaaagc
     1561 tcaacatcaa gaacagaggg ctgaaagagg gcattaaccc aggttatgat gattacgctg
     1621 actctgatga agaccagcat gatgcctatt tggagaggat gaaggaggag ggcaagatcc
     1681 gggaggagaa tgccaatgac agcagtgacg actcaggaga agaaactgat gagtccttca
     1741 atcctggtga agaagaagaa gatgtggcag aggagtttga tagcaatgcc tctgccagct
     1801 cctccagtaa tgagggcgac agcgaccgag aagagaagaa gcggaaacag ctcaaaagag
     1861 ccaagatggc caaggatcgg aagagccgca agaagtcttc agaggggaag aagggtaagg
     1921 atccaaatgc ccccaagagg cctatgtctg cgtacatgtt gtggcttaat gcaagccgag
     1981 agaagatcaa gtcagatcac cctggcatca gcatcacaga tctttccaag aaggcaggcg
     2041 aaatctggaa gggaatgtcc aaagagaaga aagaggagtg ggaccgcaag gccgaggatg
     2101 ctaggaggga gtatgagaaa gccatgaaag agtatgaagg aggacgaggg gactcgtcta
     2161 aaagggacaa gtctaagaag aaaaagaaag taaaagcaaa gttggaaaag aaatccactc
     2221 cttcccgggg ctcatcatcc aagtcttcat ccaggcagtt gagcgacagc ttcaagagca
     2281 aagagtttgt gtccagtgac gagagctctt caggcgagaa caagagcaaa aagaagagga
     2341 ggcggagcga ggactctgat gaagaggaac tagccagtac tcctccaagc tcagaggact
     2401 ctgcctcagg atctgatgag tagaggaaga gaattcctgc ccttgccctg tcacacctcc
     2461 aggctcacac ctccaggctc cctactcatt tggtaccagt gtctatggat tctgtgccat
     2521 ctgagtaact gctcttggtg gcttccactt ccctgaggct ttgagggaag cacctaacct
     2581 ctgctttgca aggaaagctc catgcaatct ggaaagagac tgggtactgg cagcgcatcg
     2641 aaggatccaa gtcctcatcc tactttgcta ctttcctgac tgtaggggca aaactgcttc
     2701 ctgtcctgtt caagttgctg cagcaggggt catgcgaagt caggcctgta gctcctaata
     2761 ggggcctatt tctactttta ttttgtattt ctggtctgtg aaaacaattt aataaaggga
     2821 actgactttg gaaaaaaaaa aaaaaaaaaa aaaaaa
//
