LOCUS       XM_017592843            4818 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus sarcospan (Sspn), transcript variant
            X1, mRNA.
ACCESSION   XM_017592843
VERSION     XM_017592843.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017592843.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017592843.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4818
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4818
                     /gene="Sspn"
                     /gene_synonym="RGD1559723"
                     /note="sarcospan; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 55 ESTs, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 34 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:500364"
                     /db_xref="RGD:1559723"
     CDS             92..553
                     /gene="Sspn"
                     /gene_synonym="RGD1559723"
                     /codon_start=1
                     /product="sarcospan isoform X1"
                     /protein_id="XP_017448332.1"
                     /db_xref="GeneID:500364"
                     /db_xref="RGD:1559723"
                     /translation="MTEVCVVAYLGLFMLCVSYQVDERTCVQFSMKVFYFLLSALGLM
                     VCTLAVAFAAHHYSLLAQFTCETSLDSCQCRLPSAEPLSRAFVYRDVTDCSSITGTFK
                     LFLVIQMVLNLVCGLVCLLACFVMWKHRYQVFYVGVGLRSLMASDGQQQKA"
ORIGIN      
        1 cagcctccag ggacaaagac agttgcgtgg gggaaactct tgatgctgct gacagaagcc
       61 gaggagagag cccaggcatg tgcttcagga tatgacagaa gtctgcgtgg tggcctacct
      121 tggactgttc atgctttgtg tctcatacca agttgacgag aggacgtgtg tccagttttc
      181 tatgaaggtg ttttatttcc tgctgagtgc cctcggcctg atggtctgca cgctggccgt
      241 ggccttcgcc gcccaccact attccctgct tgcacagttt acctgtgaaa cctccctgga
      301 ttcttgccag tgccggctgc cttccgcgga gcctctcagc agggcctttg tttacaggga
      361 tgtgactgac tgtagcagca tcactggtac tttcaaattg ttcttagtca tccagatggt
      421 tctaaacctg gtctgtggcc tggtgtgctt gctggcttgc tttgtgatgt ggaaacacag
      481 gtaccaggtc ttttatgtgg gtgttgggct gcgctccctg atggcttctg atggccagca
      541 acaaaaggcc taacaggttg gctccgtggg agacaagctc agaaacagca cacccaccgg
      601 ccagccgagg cgaaaaccac aattttttaa aggcaaactt ttgacaacaa ataccttttc
      661 attctctaaa tgtgtatttt tagatttttt ttcccgcaga aaacaaaaaa aaaaaactta
      721 tttttggatc tctattgtac tttaaaaaac aaaacaaaac aaaacaaaaa actttttgtg
      781 aggacagggg tggagagaca cggctcacaa gggaagagga ctcactgctc ttgcaaagga
      841 ctcgagttca agttcagttc cagagcccaa gttgagtggc tcacagctac ctgtatctcc
      901 agttccaggg acactgggtg ctgtgcgcat gcgcgcgcac atacgtaatt ttacaagcca
      961 acttattttt aacgttctaa tgagaaacaa gattcaaatt gacttggtga acaccaaaag
     1021 gaaaagaaca acagacaagg gacgaatgac cttgagccgg tgctaagctc tggtgcttat
     1081 ttagccctac ggctctccca tccccgccct cctctgcctt tgtgtcagtc cagtgcgatg
     1141 gtgtgaactg gcaacgcagg ccattcccta gaccctagat tcttctagct ctttctgccg
     1201 cctgccatta tccccttggt gtcttgagaa aggtctaagg aaagccgggt ctcagttgag
     1261 aggttttatt tttcacagtg gagatgtctt caaggtatga aatggctttt ttaaaaaacc
     1321 tagtagaaca agaaggctca gtgattctga acacctgggc agggtgcagc cttccggttg
     1381 ccttagctct gatccatgag tgggctgcag cctcgagagg tctgattcac cataattgaa
     1441 aggtggtgct gttgtattct taacgacgta gaaagtttaa aaataattat attatgcctc
     1501 tagactgtca tctaaaacaa atcattaaga ctaatttcca gctaattgtt cattaaaatt
     1561 atgctcagga ttctgtttaa tgagctctgg ctgttcttag gcagcaccgc tggtgttagg
     1621 aaaaattaca gccacaaggg aagatgtctg aagatctact tttcctggaa gataaccacc
     1681 acaaaaaaag aaaagaaaag aacactcagg tttaaaacac tctcagagaa aaaaacaaga
     1741 gcatttgtca tgggaaatac ttctattaat agctcgtctg tgatacattg agaaaaatct
     1801 ccccttgacc actaagtacc tttaatgggg attgggaact acgggtgagt cctgtcaaac
     1861 acatggactt cctgtgaaat cctagtgatg atgactttta cagttgacct agagacagaa
     1921 tgcctcgaag tccttgtttg ggtgatatgt ccacagttag ggcatttagg ttcagtttag
     1981 acttaagtca cagtactggt taagacaggc tttgctatgt aattggtact acccagggca
     2041 gacatgcatc tgtgggtctc agcgagtccc aggtcccagc tcagccaggc ttgcccccac
     2101 tctgcctatc catatacttt cctgtcacaa aattcccccc tagagaacac ataccctttt
     2161 gcctttgagg actttatatg atgctgataa tggaatcagt ccttcatgat ccacacaccc
     2221 tacctgaagg aaagggatca ccactgactc ttattcctga ttaacagatg cttaaacttt
     2281 ttgcattctg acttgcttcc cgatcactcg atcactcgat cactcgggtc aaggcagccc
     2341 atcagagagg atggtgagta aaattccatc agaggaacag gggtggggcg ggggtggggc
     2401 agggggctgg tacatatctt taatcccagc acttggaagg tagaaggaga tggatttctg
     2461 tgagttcaga gccagcctgg tctacaaaga aagtttctag gacagccaga gcagacagag
     2521 aaaccttgtc ttgaaaaaaa ccaaaaccaa ccaaacaaaa acaagggaaa aaaaaaaaaa
     2581 aaaaggactg atctcagaca aaattgcatg aacacagcac gaagtttcct gataccaacc
     2641 tgggatacct ttagtgtttg ttaagaataa ccagctctgg gctctgaaga tagttcagta
     2701 acctaagtcc ttgccattcc agtaagaact tgatccctta tagaaaggcc aggcatagtg
     2761 gcgtggagga agagaaggcc acatccctgg ggcttcctca acagccatct cttttttttt
     2821 tttttttggt tctttttttc ggagatgggg ggaccgaact cagggccttg cgcttcctag
     2881 gtaagcgctc taccactgag ctaaatcccc agccccaaca gccatcttta atttagcatt
     2941 tgaattctgg gtccatgatg agagagtttg tctcaaggga aaacaaacaa actgaaaata
     3001 acccagagtg gatagctgac ctctggcctc acacagttaa gaggaaccaa attcacattg
     3061 acctgggata gtgtctatag aagcaggaat gtggtagagg atccaggatg tcacgggctg
     3121 tcctttcaaa gtgaagctat cctccagtcc gtttctgtgc acccagcccg gctgaaagca
     3181 cacacagaat gcctttgtcc aacaaactca gcagggtttt gtttttgttt tctcaatgag
     3241 aaaatgaaga ttccccgccc agttaagttg cgctatgatt tgcaaacgac tcacggggtg
     3301 gtgggggtgg gtgggcattt taaagggtag aataatttta gcctgcgggt tcctactttc
     3361 taacacaacc aagagttggg gtggtttcag ctcatgatac gacgtctgcg cagaatgggg
     3421 gattttactg ttatgatcag atatccttaa ctccccagag aggggaaacg ttgtaagtga
     3481 agagaaggag cagagcccga tgatggggcc cttcgctgga agcttgctat atgctgggat
     3541 gtgtaaggat tgggttgcat gaaaaacaaa tggctttggg ctggatttgg agtattttga
     3601 cgttatgttt tgcaaatatt gaagcttcag taagggcaac agagaaggag caggcacaca
     3661 gcttctcact tagcaaaatg ttacacttca aatctgtcgc agagccagga cggtgactgt
     3721 gccttccaaa ctgtagagca gtgagctttg agcagctccc ccctccccca gcctccttca
     3781 ggaggattaa atgaatcaag acttttccaa gaggagaaat ggccagggct tgggatagga
     3841 atacggccac ctgggtttac agactgtaac tgagcccact caacgggtct gcgcctttac
     3901 ggtgactgcc atctgtggct ccaaactcca tccaaattgg tgtaggcagc accttggagc
     3961 cgtgcctaaa ccgtagctac tcaaaagccc tagaaactgt agtcaagtaa caggcatcac
     4021 atgcccctat ttggatgcag aacttagata ttctctttcg accgccttcc aatgtgttcc
     4081 tacagtggaa ttccattcta tattactttt atccatgtcc aagacctgag gatctcctga
     4141 tacttcttca ctcatgtctc tgtgcattat atctggggca tatttatgaa actgccttga
     4201 taaaagcgac ccaaggggtg tcaggagggg caactctgaa ggggctactt aaagacgatc
     4261 agaaatgaac ttgaaagctg tccatcactt gcaaacatga actgtgtctt gatatttcct
     4321 gatgactgtc tctgaactat taccgtgtga tcacctctgt ataaatatgc cactggattt
     4381 tactcttgtt aacccagaat gtgctttagc tgtgtagtgt aagttcagcc tatctgacgg
     4441 ccaactgctt agtgttgaag tcactgaaaa gaactcacgt cttctaattt tcttgtctca
     4501 agtgagcact gcctctttca gagccatggg tctgcattac ggggctgtaa tctcctttcc
     4561 tggccttgat caaatcaaga gtagaagatg gagtgtttct atacacttga ggtggttatt
     4621 tttaaagggt gtgtgtttcc tttcttaata aacttttcat aatccacaaa gacatggtgt
     4681 tgaatacgtt ttatattgac caggtggtgt gtgtgaactt gtatatgtaa actctctctg
     4741 gttagtgttt gcttcagaaa cacggcttgg aaacctcaga tcattatgtt aagtgaaata
     4801 aagccaggtt cagtaaaa
//
