LOCUS       NM_001303617             929 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus SS nuclear autoantigen 1 (Ssna1), transcript
            variant 1, mRNA.
ACCESSION   NM_001303617 XM_006233613
VERSION     NM_001303617.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 929)
  AUTHORS   Yachie,N., Petsalaki,E., Mellor,J.C., Weile,J., Jacob,Y., Verby,M.,
            Ozturk,S.B., Li,S., Cote,A.G., Mosca,R., Knapp,J.J., Ko,M., Yu,A.,
            Gebbia,M., Sahni,N., Yi,S., Tyagi,T., Sheykhkarimli,D., Roth,J.F.,
            Wong,C., Musa,L., Snider,J., Liu,Y.C., Yu,H., Braun,P.,
            Stagljar,I., Hao,T., Calderwood,M.A., Pelletier,L., Aloy,P.,
            Hill,D.E., Vidal,M. and Roth,F.P.
  TITLE     Pooled-matrix protein interaction screens using Barcode Fusion
            Genetics
  JOURNAL   Mol Syst Biol 12 (4), 863 (2016)
   PUBMED   27107012
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 929)
  AUTHORS   Goyal,U., Renvoise,B., Chang,J. and Blackstone,C.
  TITLE     Spastin-interacting protein NA14/SSNA1 functions in cytokinesis and
            axon development
  JOURNAL   PLoS One 9 (11), e112428 (2014)
   PUBMED   25390646
  REMARK    GeneRIF: NA14 may act as an adaptor protein regulating SPG4
            localization to centrosomes, temporally and spatially regulating
            the microtubule-severing activity of SPG4 that is particularly
            critical during the cell cycle and neuronal development.
            Publication Status: Online-Only
REFERENCE   3  (bases 1 to 929)
  AUTHORS   Yu,H., Tardivo,L., Tam,S., Weiner,E., Gebreab,F., Fan,C.,
            Svrzikapa,N., Hirozane-Kishikawa,T., Rietman,E., Yang,X.,
            Sahalie,J., Salehi-Ashtiani,K., Hao,T., Cusick,M.E., Hill,D.E.,
            Roth,F.P., Braun,P. and Vidal,M.
  TITLE     Next-generation sequencing to generate interactome datasets
  JOURNAL   Nat Methods 8 (6), 478-480 (2011)
   PUBMED   21516116
REFERENCE   4  (bases 1 to 929)
  AUTHORS   Jakobsen,L., Vanselow,K., Skogs,M., Toyoda,Y., Lundberg,E.,
            Poser,I., Falkenby,L.G., Bennetzen,M., Westendorf,J., Nigg,E.A.,
            Uhlen,M., Hyman,A.A. and Andersen,J.S.
  TITLE     Novel asymmetrically localizing components of human centrosomes
            identified by complementary proteomics methods
  JOURNAL   EMBO J 30 (8), 1520-1535 (2011)
   PUBMED   21399614
REFERENCE   5  (bases 1 to 929)
  AUTHORS   Lai,C.K., Gupta,N., Wen,X., Rangell,L., Chih,B., Peterson,A.S.,
            Bazan,J.F., Li,L. and Scales,S.J.
  TITLE     Functional characterization of putative cilia genes by high-content
            analysis
  JOURNAL   Mol Biol Cell 22 (7), 1104-1119 (2011)
   PUBMED   21289087
REFERENCE   6  (bases 1 to 929)
  AUTHORS   Suzuki,H., Fukunishi,Y., Kagawa,I., Saito,R., Oda,H., Endo,T.,
            Kondo,S., Bono,H., Okazaki,Y. and Hayashizaki,Y.
  TITLE     Protein-protein interaction panel using mouse full-length cDNAs
  JOURNAL   Genome Res 11 (10), 1758-1765 (2001)
   PUBMED   11591653
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1, CB576781.1 and BC166994.1.
            
            On Jan 13, 2015 this sequence version replaced XM_006233613.1.
            
            Transcript Variant: This variant (1) represents the longer
            transcript. It encodes the protein.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC166994.1, CF977567.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN16676785, SAMN16676811
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-52                JAXUCZ010000003.1  28484520-28484571   c
            53-89               CB576781.1         1-37
            90-908              BC166994.1         1-819
            909-929             JAXUCZ010000003.1  28483107-28483127   c
FEATURES             Location/Qualifiers
     source          1..929
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3p13"
     gene            1..929
                     /gene="Ssna1"
                     /note="SS nuclear autoantigen 1"
                     /db_xref="GeneID:311802"
                     /db_xref="RGD:1310259"
     exon            1..158
                     /gene="Ssna1"
                     /inference="alignment:Splign:2.1.0"
     CDS             107..466
                     /gene="Ssna1"
                     /note="Sjogren's syndrome nuclear autoantigen 1; Sjoegren
                     syndrome nuclear autoantigen 1; Sjogren syndrome nuclear
                     autoantigen 1"
                     /codon_start=1
                     /product="microtubule nucleation factor SSNA1"
                     /protein_id="NP_001290546.1"
                     /db_xref="GeneID:311802"
                     /db_xref="RGD:1310259"
                     /translation="MTQQGAALQNYNNELVKCIEELCQKREELCRQIQQEEDEKQRLQ
                     NEVRQLTEKLARVNENLARKIASRNEFDRTIAETEAAYLKILESSQTLLSVLKREAGN
                     LTKATASDQKSSGGKDS"
     exon            159..358
                     /gene="Ssna1"
                     /inference="alignment:Splign:2.1.0"
     exon            359..929
                     /gene="Ssna1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggcgcagtcg tgacgttcgc ttgctcgcgc gcgctgtgta ggcagtgcgc aggcgcgggc
       61 ttggcggtgc aggcggcggt tgaggcttac ggacgcggtg ccgaccatga cccaacaggg
      121 cgcggcgctg cagaactaca acaacgagtt ggtcaagtgc atcgaagagt tgtgtcagaa
      181 acgagaggag ctgtgccggc agatccagca ggaggaggac gaaaagcagc ggctacagaa
      241 tgaggtgagg cagctcacgg agaaattggc ccgcgtcaac gagaacctgg cgcgcaagat
      301 cgcctctcgc aacgagtttg accggaccat tgcggagaca gaggccgcct acctcaagat
      361 cctggagagc tctcagactc tgcttagtgt actcaaaaga gaagctggga acctgactaa
      421 agccacggct tcagaccaga agagtagtgg aggcaaagac agctgacaag ccctgtctca
      481 gccgtggcct atggctgctc cccaacatgt ctgtcctaaa gcatctttgt tctccatggc
      541 ctcagatgtc ttttatctct ggtgccctga gtgtcaattt ctgacctcca cctgccttga
      601 gtgacaagac aagccccagg acagtccaat ggaagatgtg ttcccagctc cgcactcaca
      661 tgtgttattg gaaccttgag ctcctggtca gctccatgag gagcctcttt ctgaagctcc
      721 tgtatctcct tgggctgcca ggaatgtctc ggtcctagtc caggtactgt gggagcccct
      781 cactttgtct cctcagccac tagggcccca ggccaggcat attgaagaaa gaatcttggc
      841 tccagaacca aaaccttagg gcccatcccc atgacctctg gtgtttcaat aaaggttgtt
      901 ttgcaagatc tgtggcatgg cctgccagc
//
