LOCUS       NM_001398910            1260 bp    mRNA    linear   ROD 23-MAR-2023
DEFINITION  Rattus norvegicus serine-rich single-pass membrane protein 1
            (Ssmem1), transcript variant 1, mRNA.
ACCESSION   NM_001398910 XM_006236228
VERSION     NM_001398910.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JACYVU010000141.1.
            
            [WARNING] On Apr 3, 2024 this sequence was replaced by
            NM_001398910.2.
            
            On Dec 28, 2021 this sequence version replaced XM_006236228.4.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00155324,
                              SAMEA5760383 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            RefSeq Select criteria    :: based on conservation, expression,
                                         longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-238               JACYVU010000141.1  48751521-48751758
            239-293             JACYVU010000141.1  48756268-48756322
            294-1260            JACYVU010000141.1  48758284-48759250
FEATURES             Location/Qualifiers
     source          1..1260
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q22"
     gene            1..1260
                     /gene="Ssmem1"
                     /gene_synonym="RGD1559502"
                     /note="serine-rich single-pass membrane protein 1"
                     /db_xref="GeneID:500068"
                     /db_xref="RGD:1559502"
     exon            1..238
                     /gene="Ssmem1"
                     /gene_synonym="RGD1559502"
                     /inference="alignment:Splign:2.1.0"
     CDS             56..793
                     /gene="Ssmem1"
                     /gene_synonym="RGD1559502"
                     /note="isoform 1 is encoded by transcript variant 1"
                     /codon_start=1
                     /product="serine-rich single-pass membrane protein 1
                     isoform 1"
                     /protein_id="NP_001385839.1"
                     /db_xref="GeneID:500068"
                     /db_xref="RGD:1559502"
                     /translation="MGDLLSLFWEVDPPPIPLTFTIPSQDAECRKDDSCGTIGSFLLW
                     YFVIILTLMFFSRASVWMSESKRDEDSGTSASLSKASKEAACKRQSREASWDSSLVLK
                     KPKQNPLSTVTDSEVALVSAYLEQRRARRHSQFHRVNQIQQDSDTTECDSEESNSGVS
                     SWKESESDHHPSPATIKRRKSVARQRDMENYEVRERPCLHCKAMRTSEWLTRHFPPST
                     SVTTPMKGEIQEENLTPGSTNTKLSKF"
     exon            239..293
                     /gene="Ssmem1"
                     /gene_synonym="RGD1559502"
                     /inference="alignment:Splign:2.1.0"
     exon            294..1260
                     /gene="Ssmem1"
                     /gene_synonym="RGD1559502"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tcccagtcac ctccatccct ttgagcatgt tttattttct aagcaagaag ctatcatggg
       61 agaccttctg tctttatttt gggaggtgga ccctcctccc atacctctca cttttaccat
      121 tcccagccag gatgccgagt gccggaagga tgactcttgt gggacaatag ggagcttcct
      181 gctttggtat ttcgtcatca tactgaccct catgttcttc tctcgggctt ccgtctggat
      241 gtctgagagc aaaagggatg aagacagtgg gaccagtgct tcactaagta aagcaagcaa
      301 agaggctgcc tgtaagcgac agagtagaga agcgtcctgg gattcctcac tagtgctgaa
      361 gaaaccgaag cagaacccac tttccacagt aactgactct gaggtggctt tggtcagcgc
      421 ctaccttgaa caaagacgag ccaggcgcca ttcccagttt caccgggtga atcagatcca
      481 acaagacagt gacaccactg aatgtgacag tgaggagtca aactccggag tgtcatcctg
      541 gaaggagagc gaaagcgacc atcatccgtc acctgccact attaagagga ggaagtcagt
      601 ggcgaggcaa agggatatgg aaaactatga agtccgagag aggccttgtc tccactgcaa
      661 agccatgaga accagtgagt ggctgacacg tcacttccca ccaagcactt cagtaacaac
      721 ccccatgaag ggagagattc aagaggagaa tttgacacct ggtagtacca acacaaaatt
      781 aagcaagttt tgaattttgg catctttacc ttacttgaag tcaaaaagag gaggtgaata
      841 aaacatggaa atcagagttg taggtgaggg agacgttcac aataaagcct ctttactaac
      901 aacaaaagta taattggagc ccaagacaaa tttcaaatat cagacagatt cattgcttaa
      961 aacaagggca gagaatttgt tcatgccacc atgggaacac agaagacctg tatcttctat
     1021 gatctttttt tttttttttt ttttttttgg ttcttttttt ccggagctgg ggaccgaacc
     1081 cagggtcttg cgcttcctag gtaagcgctc taccactgag ctaaatcccc agccccatat
     1141 gatctttttt taagtcaaaa gagcccaggg cagatagtcc ataccccaag tatatgtatt
     1201 ttgtttgtct atgatacaaa tatgaaagct ctttgaaaat atatttatgt tgagaaacca
//
